Zinc in PDB 6e83: Solution Structure of ZZZ3 Zz Domain in Complex with Histone H3 Tail

The binding sites of Zinc atom in the Solution Structure of ZZZ3 Zz Domain in Complex with Histone H3 Tail (pdb code 6e83). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of ZZZ3 Zz Domain in Complex with Histone H3 Tail, PDB code: 6e83:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of ZZZ3 Zz Domain in Complex with Histone H3 Tail


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of ZZZ3 Zz Domain in Complex with Histone H3 Tail within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn101 b:0.0 occ:1.00 SG B:CYS826 2.1 0.0 1.0 SG B:CYS853 2.1 0.0 1.0 SG B:CYS850 2.1 0.0 1.0 SG B:CYS823 2.1 0.0 1.0 HB2 B:CYS853 2.5 0.0 1.0 CB B:CYS853 2.8 0.0 1.0 H B:CYS826 2.8 0.0 1.0 H B:CYS850 3.0 0.0 1.0 HB3 B:CYS826 3.2 0.0 1.0 CB B:CYS826 3.2 0.0 1.0 CB B:CYS823 3.2 0.0 1.0 HB3 B:CYS853 3.3 0.0 1.0 HB3 B:CYS823 3.3 0.0 1.0 HB2 B:CYS823 3.4 0.0 1.0 HG21 B:ILE828 3.5 0.0 1.0 HB3 B:ASN825 3.5 0.0 1.0 N B:CYS826 3.6 0.0 1.0 CB B:CYS850 3.6 0.0 1.0 HB3 B:CYS850 3.8 0.0 1.0 HD21 B:ASN825 3.8 0.0 1.0 HB2 B:SER852 3.8 0.0 1.0 N B:CYS850 3.9 0.0 1.0 CA B:CYS826 3.9 0.0 1.0 H B:CYS853 4.1 0.0 1.0 CA B:CYS853 4.1 0.0 1.0 HB2 B:CYS826 4.2 0.0 1.0 N B:CYS853 4.2 0.0 1.0 CA B:CYS850 4.3 0.0 1.0 HG22 B:ILE828 4.3 0.0 1.0 CG2 B:ILE828 4.3 0.0 1.0 H B:ASN825 4.4 0.0 1.0 H B:GLY827 4.4 0.0 1.0 HB2 B:CYS850 4.4 0.0 1.0 H B:ILE828 4.4 0.0 1.0 HA B:CYS853 4.5 0.0 1.0 HA B:PHE849 4.5 0.0 1.0 CB B:ASN825 4.5 0.0 1.0 C B:ASN825 4.5 0.0 1.0 HG23 B:ILE828 4.6 0.0 1.0 CA B:CYS823 4.7 0.0 1.0 C B:CYS826 4.7 0.0 1.0 ND2 B:ASN825 4.7 0.0 1.0 N B:GLY827 4.8 0.0 1.0 O B:CYS850 4.8 0.0 1.0 CB B:SER852 4.9 0.0 1.0 C B:CYS850 4.9 0.0 1.0 HA B:CYS826 4.9 0.0 1.0 CA B:ASN825 4.9 0.0 1.0 HB3 B:PHE849 4.9 0.0 1.0 N B:ASN825 5.0 0.0 1.0 C B:SER852 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of ZZZ3 Zz Domain in Complex with Histone H3 Tail


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of ZZZ3 Zz Domain in Complex with Histone H3 Tail within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn102 b:0.0 occ:1.00 NE2 B:HIS867 2.0 0.0 1.0 ND1 B:HIS863 2.0 0.0 1.0 SG B:CYS838 2.1 0.0 1.0 SG B:CYS841 2.1 0.0 1.0 HB3 B:CYS838 2.3 0.0 1.0 CE1 B:HIS867 2.6 0.0 1.0 CB B:CYS838 2.7 0.0 1.0 HE1 B:HIS867 2.7 0.0 1.0 HE1 B:HIS863 2.8 0.0 1.0 CE1 B:HIS863 2.8 0.0 1.0 CD2 B:HIS867 2.9 0.0 1.0 HB2 B:LEU847 3.1 0.0 1.0 CG B:HIS863 3.3 0.0 1.0 HB2 B:CYS838 3.4 0.0 1.0 HD2 B:HIS867 3.4 0.0 1.0 ND1 B:HIS867 3.5 0.0 1.0 HD22 B:LEU847 3.5 0.0 1.0 HD11 B:LEU847 3.6 0.0 1.0 CG B:HIS867 3.6 0.0 1.0 HA B:CYS838 3.7 0.0 1.0 HB2 B:HIS863 3.7 0.0 1.0 CA B:CYS838 3.8 0.0 1.0 HA B:HIS863 3.9 0.0 1.0 CB B:CYS841 3.9 0.0 1.0 HB3 B:LEU847 3.9 0.0 1.0 H B:CYS841 3.9 0.0 1.0 CB B:LEU847 3.9 0.0 1.0 HD13 B:LEU869 4.0 0.0 1.0 CB B:HIS863 4.0 0.0 1.0 NE2 B:HIS863 4.0 0.0 1.0 HD12 B:LEU869 4.1 0.0 1.0 HB2 B:CYS841 4.1 0.0 1.0 CD2 B:HIS863 4.3 0.0 1.0 HB3 B:CYS841 4.4 0.0 1.0 CD2 B:LEU847 4.4 0.0 1.0 CD1 B:LEU847 4.5 0.0 1.0 C B:CYS838 4.5 0.0 1.0 CG B:LEU847 4.5 0.0 1.0 CA B:HIS863 4.5 0.0 1.0 H B:ASP840 4.5 0.0 1.0 CD1 B:LEU869 4.5 0.0 1.0 H B:LYS864 4.5 0.0 1.0 N B:CYS841 4.7 0.0 1.0 HD11 B:LEU869 4.8 0.0 1.0 CA B:CYS841 4.9 0.0 1.0 HD21 B:LEU847 4.9 0.0 1.0 H B:GLN839 4.9 0.0 1.0 N B:CYS838 4.9 0.0 1.0 O B:CYS838 4.9 0.0 1.0 CB B:HIS867 5.0 0.0 1.0 H B:LEU847 5.0 0.0 1.0 HB3 B:HIS863 5.0 0.0 1.0 O B:GLN868 5.0 0.0 1.0

W.Mi, Y.Zhang, J.Lyu, X.Wang, Q.Tong, D.Peng, Y.Xue, A.H.Tencer, H.Wen, W.Li, T.G.Kutateladze, X.Shi. The Zz-Type Zinc Finger of ZZZ3 Modulates the Atac Complex-Mediated Histone Acetylation and Gene Activation. Nat Commun V. 9 3759 2018.
ISSN: ESSN 2041-1723
PubMed: 30217978
DOI: 10.1038/S41467-018-06247-5