Zinc in PDB 6dy9: Crystal Structure of Double-Stranded Dna Gggatccc; Crystals Grown in ZN2+

The structure of Crystal Structure of Double-Stranded Dna Gggatccc; Crystals Grown in ZN2+, PDB code: 6dy9 was solved by C.Hou, O.V.Tsodikov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 2.30
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	46.221, 46.221, 43.426, 90.00, 90.00, 120.00
R / Rfree (%)	25.3 / 27.6

The binding sites of Zinc atom in the Crystal Structure of Double-Stranded Dna Gggatccc; Crystals Grown in ZN2+ (pdb code 6dy9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Double-Stranded Dna Gggatccc; Crystals Grown in ZN2+, PDB code: 6dy9:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Double-Stranded Dna Gggatccc; Crystals Grown in ZN2+


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Double-Stranded Dna Gggatccc; Crystals Grown in ZN2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn101 b:0.2 occ:1.00 N7 A:DG3 2.1 82.4 1.0 C8 A:DG3 2.9 78.8 1.0 C5 A:DG3 3.2 77.9 1.0 O6 A:DG3 3.7 76.6 1.0 C6 A:DG3 3.8 77.1 1.0 N7 A:DG2 3.9 67.7 1.0 N9 A:DG3 4.1 78.0 1.0 C5 A:DG2 4.2 67.3 1.0 OP2 A:DG3 4.2 77.5 1.0 C4 A:DG3 4.3 77.8 1.0 C8 A:DG2 4.4 68.2 1.0 C6 A:DG2 4.5 66.6 1.0 O6 A:DG2 4.6 66.3 1.0 C4 A:DG2 4.7 68.0 1.0 O5' A:DG3 4.9 77.3 1.0 N9 A:DG2 4.9 69.1 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Double-Stranded Dna Gggatccc; Crystals Grown in ZN2+


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Double-Stranded Dna Gggatccc; Crystals Grown in ZN2+ within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn101 b:74.5 occ:0.50 N7 B:DG9 2.1 75.8 1.0 C5 B:DG9 3.0 75.5 1.0 C8 B:DG9 3.1 76.4 1.0 O6 B:DG9 3.3 74.9 1.0 C6 B:DG9 3.5 75.0 1.0 O B:HOH201 3.7 52.1 1.0 C4 B:DG9 4.2 75.7 1.0 N9 B:DG9 4.2 76.3 1.0 N7 B:DG10 4.6 68.5 1.0 N1 B:DG9 4.9 74.6 1.0

C.Hou, O.V.Tsodikov. Utilizing Guanine Coordinated ZN2+ to Determine Dna Crystal Structures By Single-Wavelength Anomalous Diffraction Acta Crystallogr.,Sect.D V. 75 32 2019.
ISSN: ISSN 0907-4449