Zinc in PDB 6dmy: Cryo-Em Structure of Human PTCH1 and Shhn Complex

Other elements in 6dmy:

The structure of Cryo-Em Structure of Human PTCH1 and Shhn Complex also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Human PTCH1 and Shhn Complex (pdb code 6dmy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Human PTCH1 and Shhn Complex, PDB code: 6dmy:

Zinc binding site 1 out of 1 in 6dmy

Go back to Zinc Binding Sites List in 6dmy
Zinc binding site 1 out of 1 in the Cryo-Em Structure of Human PTCH1 and Shhn Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Human PTCH1 and Shhn Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn202

b:7.8
occ:1.00
OD2 B:ASP147 2.1 9.6 1.0
NE2 B:HIS140 2.2 4.7 1.0
OD1 B:ASP147 2.3 5.2 1.0
CG B:ASP147 2.5 9.4 1.0
ND1 B:HIS182 2.9 6.6 1.0
CD2 B:HIS140 3.1 7.9 1.0
CE1 B:HIS140 3.1 8.6 1.0
CE1 B:HIS182 3.5 8.4 1.0
OE1 B:GLU176 3.5 15.5 1.0
CB B:ASP147 4.0 5.2 1.0
NE2 B:HIS180 4.2 12.9 1.0
CG B:HIS182 4.2 6.6 1.0
ND1 B:HIS140 4.2 6.9 1.0
CG B:HIS140 4.2 5.0 1.0
CD B:GLU176 4.4 18.4 1.0
CD2 B:HIS180 4.5 12.4 1.0
OE2 B:GLU176 4.6 24.6 1.0
CB B:HIS182 4.7 6.7 1.0
OE1 B:GLU126 4.7 19.7 1.0
NE2 B:HIS182 4.8 9.1 1.0
CA B:ASP147 4.9 5.1 1.0
N B:ASP147 5.0 5.0 1.0

Reference:

X.Gong, H.Qian, P.Cao, X.Zhao, Q.Zhou, J.Lei, N.Yan. Structural Basis For the Recognition of Sonic Hedgehog By Human PATCHED1. Science V. 361 2018.
ISSN: ESSN 1095-9203
PubMed: 29954986
DOI: 10.1126/SCIENCE.AAS8935
Page generated: Wed Dec 16 11:40:38 2020

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