Zinc in PDB 6dch: Structure of Isonitrile Biosynthesis Enzyme Scoe

The structure of Structure of Isonitrile Biosynthesis Enzyme Scoe, PDB code: 6dch was solved by D.A.Born, C.L.Drennan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	58.24 / 1.80
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	62.100, 62.100, 167.850, 90.00, 90.00, 90.00
R / Rfree (%)	17.9 / 20.7

The structure of Structure of Isonitrile Biosynthesis Enzyme Scoe also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Zinc atom in the Structure of Isonitrile Biosynthesis Enzyme Scoe (pdb code 6dch). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Isonitrile Biosynthesis Enzyme Scoe, PDB code: 6dch:

Zinc binding site 1 out of 1 in the Structure of Isonitrile Biosynthesis Enzyme Scoe


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Isonitrile Biosynthesis Enzyme Scoe within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn403 b:18.5 occ:1.00 OXT A:ACT401 1.9 23.6 1.0 OD1 A:ASP134 2.0 15.9 1.0 NE2 A:HIS132 2.0 15.1 1.0 NE2 A:HIS295 2.0 17.5 1.0 C A:ACT401 2.6 29.4 1.0 O A:ACT401 2.6 25.6 1.0 CG A:ASP134 2.9 18.5 1.0 CE1 A:HIS132 3.0 15.4 1.0 CD2 A:HIS132 3.0 17.8 1.0 CE1 A:HIS295 3.0 16.3 1.0 CD2 A:HIS295 3.0 16.7 1.0 OD2 A:ASP134 3.2 17.6 1.0 NH1 A:ARG310 3.7 16.8 1.0 CH3 A:ACT401 4.0 30.4 1.0 ND1 A:HIS132 4.0 16.0 1.0 CG A:HIS132 4.1 15.2 1.0 ND1 A:HIS295 4.1 15.9 1.0 CG A:HIS295 4.2 15.6 1.0 C8 A:CHT404 4.2 19.4 0.5 C8 A:CHT404 4.2 19.4 0.5 CB A:ASP134 4.3 15.6 1.0 CA A:ASP134 4.6 16.0 1.0 N A:ASP134 4.7 14.8 1.0 O A:HOH587 4.7 29.6 1.0 CZ A:ARG310 4.9 19.3 1.0

N.C.Harris, D.A.Born, W.Cai, Y.Huang, J.Martin, R.Khalaf, C.L.Drennan, W.Zhang. Isonitrile Formation By A Non-Heme Iron(II)-Dependent Oxidase/Decarboxylase. Angew. Chem. Int. Ed. Engl. V. 57 9707 2018.
ISSN: ESSN 1521-3773
PubMed: 29906336
DOI: 10.1002/ANIE.201804307