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Zinc in PDB 6d6q: Human Nuclear Exosome-MTR4 Rna Complex - Overall Reconstruction

Enzymatic activity of Human Nuclear Exosome-MTR4 Rna Complex - Overall Reconstruction

All present enzymatic activity of Human Nuclear Exosome-MTR4 Rna Complex - Overall Reconstruction:
3.6.4.13;

Other elements in 6d6q:

The structure of Human Nuclear Exosome-MTR4 Rna Complex - Overall Reconstruction also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Human Nuclear Exosome-MTR4 Rna Complex - Overall Reconstruction (pdb code 6d6q). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Human Nuclear Exosome-MTR4 Rna Complex - Overall Reconstruction, PDB code: 6d6q:

Zinc binding site 1 out of 1 in 6d6q

Go back to Zinc Binding Sites List in 6d6q
Zinc binding site 1 out of 1 in the Human Nuclear Exosome-MTR4 Rna Complex - Overall Reconstruction


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Human Nuclear Exosome-MTR4 Rna Complex - Overall Reconstruction within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Zn2002

b:0.5
occ:1.00
NE2 K:HIS159 1.9 70.8 1.0
SG K:CYS31 2.3 59.6 1.0
SG K:CYS39 2.3 84.7 1.0
SG K:CYS36 2.5 80.3 1.0
CE1 K:HIS159 2.7 70.8 1.0
CD2 K:HIS159 2.9 70.8 1.0
CB K:CYS36 3.0 80.3 1.0
CB K:CYS39 3.2 84.7 1.0
CB K:CYS31 3.2 59.6 1.0
ND1 K:HIS159 3.7 70.8 1.0
CG K:HIS159 3.8 70.8 1.0
O K:CYS36 4.1 80.3 1.0
N K:CYS31 4.2 59.6 1.0
CA K:CYS31 4.3 59.6 1.0
CA K:CYS36 4.3 80.3 1.0
CA K:CYS39 4.6 84.7 1.0
C K:CYS36 4.6 80.3 1.0
N K:CYS39 5.0 84.7 1.0
CH2 K:TRP155 5.0 54.6 1.0

Reference:

E.M.Weick, M.R.Puno, K.Januszyk, J.C.Zinder, M.A.Dimattia, C.D.Lima. Helicase-Dependent Rna Decay Illuminated By A Cryo-Em Structure of A Human Nuclear Rna Exosome-MTR4 Complex. Cell V. 173 1663 2018.
ISSN: ISSN 1097-4172
PubMed: 29906447
DOI: 10.1016/J.CELL.2018.05.041
Page generated: Wed Dec 16 11:39:15 2020

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