Atomistry » Zinc » PDB 6bdz-6bsf » 6bnc
Atomistry »
  Zinc »
    PDB 6bdz-6bsf »
      6bnc »

Zinc in PDB 6bnc: Crystal Structure of the Intrinsic Colistin Resistance Enzyme Icr(Mc) From Moraxella Catarrhalis, Catalytic Domain, THR315ALA Mutant Di- Zinc and Peg Complex

Protein crystallography data

The structure of Crystal Structure of the Intrinsic Colistin Resistance Enzyme Icr(Mc) From Moraxella Catarrhalis, Catalytic Domain, THR315ALA Mutant Di- Zinc and Peg Complex, PDB code: 6bnc was solved by P.J.Stogios, E.Evdokimova, Z.Wawrzak, A.Savchenko, W.F.Anderson, K.J.Satchell, A.Joachimiak, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.82 / 1.50
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 74.051, 154.246, 66.392, 90.00, 90.00, 90.00
R / Rfree (%) 13.2 / 15.3

Other elements in 6bnc:

The structure of Crystal Structure of the Intrinsic Colistin Resistance Enzyme Icr(Mc) From Moraxella Catarrhalis, Catalytic Domain, THR315ALA Mutant Di- Zinc and Peg Complex also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Intrinsic Colistin Resistance Enzyme Icr(Mc) From Moraxella Catarrhalis, Catalytic Domain, THR315ALA Mutant Di- Zinc and Peg Complex (pdb code 6bnc). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of the Intrinsic Colistin Resistance Enzyme Icr(Mc) From Moraxella Catarrhalis, Catalytic Domain, THR315ALA Mutant Di- Zinc and Peg Complex, PDB code: 6bnc:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 6bnc

Go back to Zinc Binding Sites List in 6bnc
Zinc binding site 1 out of 4 in the Crystal Structure of the Intrinsic Colistin Resistance Enzyme Icr(Mc) From Moraxella Catarrhalis, Catalytic Domain, THR315ALA Mutant Di- Zinc and Peg Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Intrinsic Colistin Resistance Enzyme Icr(Mc) From Moraxella Catarrhalis, Catalytic Domain, THR315ALA Mutant Di- Zinc and Peg Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn601

b:9.6
occ:1.00
 O A:HOH918 1.9 8.5 1.0
OD2 A:ASP498 1.9 9.8 1.0
OE2 A:GLU273 2.0 9.2 1.0
NE2 A:HIS499 2.0 8.6 1.0
OE1 A:GLU273 2.6 9.7 1.0
CD A:GLU273 2.6 9.6 1.0
CG A:ASP498 2.8 9.2 1.0
OD1 A:ASP498 3.0 9.7 1.0
CD2 A:HIS499 3.0 9.5 1.0
CE1 A:HIS499 3.0 7.6 1.0
N A:ALA315 3.3 9.3 1.0
ZN A:ZN602 3.4 11.2 1.0
CB A:ALA315 3.8 9.2 1.0
NE2 A:HIS511 3.9 9.4 1.0
CA A:ALA315 3.9 8.4 1.0
ND1 A:HIS499 4.0 8.8 1.0
C A:SER314 4.0 12.2 1.0
CG A:HIS499 4.0 8.6 1.0
CG A:GLU273 4.1 8.6 1.0
OG1 A:THR274 4.1 10.9 1.0
CB A:ASP498 4.2 8.9 1.0
CD2 A:HIS429 4.2 12.7 1.0
O A:HOH890 4.2 12.5 1.0
O A:HOH800 4.2 10.3 1.0
CA A:SER314 4.3 11.4 1.0
NE2 A:HIS429 4.4 14.7 1.0
CE1 A:HIS511 4.4 10.3 1.0
CD2 A:HIS511 4.5 10.2 1.0
N A:THR274 4.5 8.2 1.0
CA A:GLU273 4.7 9.6 1.0
OH B:TYR338 4.8 12.9 1.0
CB A:GLU273 4.9 9.3 1.0
O A:SER314 4.9 11.0 1.0

Zinc binding site 2 out of 4 in 6bnc

Go back to Zinc Binding Sites List in 6bnc
Zinc binding site 2 out of 4 in the Crystal Structure of the Intrinsic Colistin Resistance Enzyme Icr(Mc) From Moraxella Catarrhalis, Catalytic Domain, THR315ALA Mutant Di- Zinc and Peg Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Intrinsic Colistin Resistance Enzyme Icr(Mc) From Moraxella Catarrhalis, Catalytic Domain, THR315ALA Mutant Di- Zinc and Peg Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn602

b:11.2
occ:1.00
 OH B:TYR338 1.9 12.9 1.0
O A:HOH918 2.0 8.5 1.0
NE2 A:HIS511 2.1 9.4 1.0
NE2 A:HIS429 2.1 14.7 1.0
CZ B:TYR338 2.9 15.8 1.0
CE1 A:HIS511 3.0 10.3 1.0
CE1 A:HIS429 3.0 14.9 1.0
CD2 A:HIS429 3.0 12.7 1.0
CD2 A:HIS511 3.1 10.2 1.0
CE1 B:TYR338 3.2 32.0 1.0
ZN A:ZN601 3.4 9.6 1.0
O A:HOH890 3.8 12.5 1.0
NE2 A:HIS499 4.0 8.6 1.0
OE2 A:GLU273 4.0 9.2 1.0
ND1 A:HIS429 4.1 13.3 1.0
CE2 B:TYR338 4.1 23.7 1.0
ND1 A:HIS511 4.1 11.7 1.0
CG A:HIS429 4.1 11.8 1.0
O B:HOH852 4.1 14.8 1.0
CG A:HIS511 4.2 10.0 1.0
N A:ALA315 4.3 9.3 1.0
CE1 A:HIS499 4.4 7.6 1.0
CD1 B:TYR338 4.6 30.4 1.0
CA A:SER314 4.6 11.4 1.0
CD A:GLU273 4.6 9.6 1.0
OE1 A:GLU273 4.7 9.7 1.0
CB A:SER314 4.7 11.3 1.0
O B:HOH730 4.9 35.1 1.0
OG1 A:THR274 4.9 10.9 1.0
O A:HOH1081 4.9 54.1 1.0
O A:HOH1084 5.0 21.6 1.0
C A:SER314 5.0 12.2 1.0

Zinc binding site 3 out of 4 in 6bnc

Go back to Zinc Binding Sites List in 6bnc
Zinc binding site 3 out of 4 in the Crystal Structure of the Intrinsic Colistin Resistance Enzyme Icr(Mc) From Moraxella Catarrhalis, Catalytic Domain, THR315ALA Mutant Di- Zinc and Peg Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of the Intrinsic Colistin Resistance Enzyme Icr(Mc) From Moraxella Catarrhalis, Catalytic Domain, THR315ALA Mutant Di- Zinc and Peg Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn601

b:9.8
occ:1.00
 O B:HOH927 1.9 8.4 1.0
OD2 B:ASP498 2.0 8.9 1.0
OE2 B:GLU273 2.0 9.1 1.0
NE2 B:HIS499 2.0 8.4 1.0
OE1 B:GLU273 2.6 9.5 1.0
CD B:GLU273 2.6 9.0 1.0
CG B:ASP498 2.7 8.4 1.0
OD1 B:ASP498 2.9 8.8 1.0
CE1 B:HIS499 3.0 7.7 1.0
CD2 B:HIS499 3.0 9.1 1.0
N B:ALA315 3.4 9.5 1.0
ZN B:ZN602 3.4 10.6 1.0
CB B:ALA315 3.8 10.5 1.0
CA B:ALA315 3.9 8.0 1.0
NE2 B:HIS511 4.0 8.7 1.0
ND1 B:HIS499 4.0 8.5 1.0
CG B:HIS499 4.0 8.6 1.0
C B:SER314 4.1 11.2 1.0
OG1 B:THR274 4.1 11.1 1.0
CG B:GLU273 4.1 8.8 1.0
CB B:ASP498 4.2 8.6 1.0
CD2 B:HIS429 4.2 12.5 1.0
O B:HOH909 4.2 11.3 1.0
O B:HOH792 4.2 10.3 1.0
CA B:SER314 4.3 9.5 1.0
NE2 B:HIS429 4.4 10.3 1.0
N B:THR274 4.5 8.4 1.0
CE1 B:HIS511 4.5 10.1 1.0
CD2 B:HIS511 4.5 9.3 1.0
CA B:GLU273 4.7 7.6 1.0
OH A:TYR338 4.7 13.6 1.0
CB B:GLU273 4.9 8.8 1.0
O B:SER314 4.9 11.9 1.0

Zinc binding site 4 out of 4 in 6bnc

Go back to Zinc Binding Sites List in 6bnc
Zinc binding site 4 out of 4 in the Crystal Structure of the Intrinsic Colistin Resistance Enzyme Icr(Mc) From Moraxella Catarrhalis, Catalytic Domain, THR315ALA Mutant Di- Zinc and Peg Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of the Intrinsic Colistin Resistance Enzyme Icr(Mc) From Moraxella Catarrhalis, Catalytic Domain, THR315ALA Mutant Di- Zinc and Peg Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn602

b:10.6
occ:1.00
 OH A:TYR338 1.9 13.6 1.0
O B:HOH927 2.0 8.4 1.0
NE2 B:HIS511 2.0 8.7 1.0
NE2 B:HIS429 2.1 10.3 1.0
CZ A:TYR338 2.8 14.8 1.0
CE1 B:HIS429 3.0 11.8 1.0
CE1 B:HIS511 3.0 10.1 1.0
CD2 B:HIS429 3.0 12.5 1.0
CE2 A:TYR338 3.1 32.5 1.0
CD2 B:HIS511 3.1 9.3 1.0
ZN B:ZN601 3.4 9.8 1.0
O B:HOH909 3.8 11.3 1.0
NE2 B:HIS499 4.0 8.4 1.0
OE2 B:GLU273 4.0 9.1 1.0
ND1 B:HIS429 4.1 12.2 1.0
CG B:HIS429 4.1 9.8 1.0
O A:HOH867 4.1 13.6 1.0
CE1 A:TYR338 4.1 24.9 1.0
ND1 B:HIS511 4.1 11.0 1.0
CG B:HIS511 4.2 9.0 1.0
N B:ALA315 4.3 9.5 1.0
CE1 B:HIS499 4.4 7.7 1.0
CD2 A:TYR338 4.5 33.8 1.0
CA B:SER314 4.6 9.5 1.0
CD B:GLU273 4.6 9.0 1.0
OE1 B:GLU273 4.6 9.5 1.0
CB B:SER314 4.6 11.0 1.0
OG1 B:THR274 4.9 11.1 1.0
O A:HOH731 4.9 31.3 1.0
C B:SER314 5.0 11.2 1.0

Reference:

P.J.Stogios, G.Cox, H.L.Zubyk, E.Evdokimova, Z.Wawrzak, G.D.Wright, A.Savchenko. Substrate Recognition By A Colistin Resistance Enzyme From Moraxella Catarrhalis. Acs Chem. Biol. V. 13 1322 2018.
ISSN: ESSN 1554-8937
PubMed: 29631403
DOI: 10.1021/ACSCHEMBIO.8B00116
Page generated: Mon Oct 28 18:09:36 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy