Zinc in PDB 5zjv: Crystal Structure of the Catalytic Domain of Mcr-1 (Cmcr-1) in Complex with Xylose

The structure of Crystal Structure of the Catalytic Domain of Mcr-1 (Cmcr-1) in Complex with Xylose, PDB code: 5zjv was solved by Z.X.Liu, Z.Han, X.L.Yu, G.Wen, C.Zeng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.71 / 1.82
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	51.580, 73.130, 82.300, 90.00, 90.00, 90.00
R / Rfree (%)	14.8 / 18.6

The binding sites of Zinc atom in the Crystal Structure of the Catalytic Domain of Mcr-1 (Cmcr-1) in Complex with Xylose (pdb code 5zjv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Catalytic Domain of Mcr-1 (Cmcr-1) in Complex with Xylose, PDB code: 5zjv:

Zinc binding site 1 out of 1 in the Crystal Structure of the Catalytic Domain of Mcr-1 (Cmcr-1) in Complex with Xylose


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Catalytic Domain of Mcr-1 (Cmcr-1) in Complex with Xylose within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn402 b:8.8 occ:0.63 OD2 A:ASP250 2.0 10.5 1.0 OE1 A:GLU31 2.1 11.9 1.0 NE2 A:HIS251 2.1 8.6 1.0 O2P A:TPO70 2.2 10.8 1.0 OE2 A:GLU31 2.2 11.7 1.0 OG1 A:TPO70 2.3 9.9 1.0 CD A:GLU31 2.4 12.2 1.0 P A:TPO70 2.9 13.1 1.0 CE1 A:HIS251 2.9 9.4 1.0 CG A:ASP250 3.0 12.6 1.0 CD2 A:HIS251 3.1 7.2 1.0 OD1 A:ASP250 3.2 8.9 1.0 CB A:TPO70 3.5 7.4 1.0 N A:TPO70 3.8 10.5 1.0 CA A:TPO70 3.8 9.8 1.0 O3P A:TPO70 3.9 14.5 1.0 CG A:GLU31 3.9 7.4 1.0 ND1 A:HIS251 4.0 8.6 1.0 O1P A:TPO70 4.0 14.8 1.0 NE2 A:HIS263 4.1 19.9 1.0 CG2 A:TPO70 4.1 11.2 1.0 CG A:HIS251 4.1 9.6 1.0 O A:HOH567 4.2 14.8 1.0 OG1 A:THR32 4.2 9.8 1.0 CB A:ASP250 4.4 12.0 1.0 C A:SER69 4.5 11.5 1.0 CD2 A:HIS180 4.6 23.9 1.0 N A:THR32 4.6 12.1 1.0 CE1 A:HIS263 4.7 19.3 1.0 CA A:GLU31 4.7 9.1 1.0 CB A:GLU31 4.7 9.7 1.0 CD2 A:HIS263 4.8 12.3 1.0 NE2 A:HIS180 4.8 20.5 1.0 CA A:SER69 4.9 8.2 1.0

Z.X.Liu, Z.Han, X.L.Yu, G.Wen, C.Zeng. Crystal Structure of the Catalytic Domain of Mcr-1 (Cmcr-1) in Complex with D-Xylose Crystals V. 8 2018.
ISSN: ESSN 2073-4352
DOI: 10.3390/CRYST8040172