Atomistry » Zinc » PDB 5z8l-5zhf » 5zb3
Atomistry »
  Zinc »
    PDB 5z8l-5zhf »
      5zb3 »

Zinc in PDB 5zb3: Dimeric Crystal Structure of ORF57 From Kshv

Protein crystallography data

The structure of Dimeric Crystal Structure of ORF57 From Kshv, PDB code: 5zb3 was solved by Z.Q.Gao, F.Yuan, Y.H.Dong, K.Lan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.15 / 3.51
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 167.529, 167.529, 227.632, 90.00, 90.00, 120.00
R / Rfree (%) 25.7 / 30.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Dimeric Crystal Structure of ORF57 From Kshv (pdb code 5zb3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Dimeric Crystal Structure of ORF57 From Kshv, PDB code: 5zb3:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 5zb3

Go back to Zinc Binding Sites List in 5zb3
Zinc binding site 1 out of 2 in the Dimeric Crystal Structure of ORF57 From Kshv


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Dimeric Crystal Structure of ORF57 From Kshv within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn500

b:92.9
occ:1.00
NE2 A:HIS423 2.1 92.8 1.0
SG A:CYS432 2.3 82.9 1.0
SG A:CYS427 2.3 0.4 1.0
SG A:CYS333 2.4 94.1 1.0
CE1 A:HIS423 3.0 0.6 1.0
CD2 A:HIS423 3.2 84.9 1.0
CB A:CYS333 3.2 0.2 1.0
CB A:CYS432 3.3 87.5 1.0
CB A:CYS427 3.4 0.3 1.0
O A:CYS333 3.7 0.3 1.0
C A:CYS333 3.9 95.7 1.0
ND1 A:HIS423 4.1 0.4 1.0
CA A:CYS333 4.2 0.2 1.0
CG A:HIS423 4.3 86.5 1.0
N A:VAL334 4.4 97.8 1.0
CE1 A:HIS424 4.5 96.9 1.0
CA A:CYS432 4.7 92.1 1.0
CG2 A:VAL334 4.8 79.4 1.0
ND1 A:HIS424 4.8 0.5 1.0
CA A:VAL334 4.8 81.0 1.0
CA A:CYS427 4.8 1.0 1.0
CB A:ASN429 5.0 0.7 1.0
O A:CYS427 5.0 0.6 1.0

Zinc binding site 2 out of 2 in 5zb3

Go back to Zinc Binding Sites List in 5zb3
Zinc binding site 2 out of 2 in the Dimeric Crystal Structure of ORF57 From Kshv


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Dimeric Crystal Structure of ORF57 From Kshv within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn500

b:78.7
occ:1.00
NE2 B:HIS423 2.0 89.1 1.0
SG B:CYS333 2.3 89.2 1.0
SG B:CYS432 2.3 91.2 1.0
SG B:CYS427 2.3 97.1 1.0
CE1 B:HIS423 2.8 0.3 1.0
CD2 B:HIS423 3.0 79.6 1.0
CB B:CYS427 3.1 84.5 1.0
CB B:CYS432 3.3 85.2 1.0
CB B:CYS333 3.3 77.8 1.0
ND1 B:HIS423 3.9 1.0 1.0
CG B:HIS423 4.0 81.4 1.0
C B:CYS333 4.2 79.9 1.0
O B:CYS333 4.2 0.9 1.0
CA B:CYS333 4.3 78.7 1.0
CE1 B:HIS424 4.5 0.5 1.0
CA B:CYS427 4.6 89.6 1.0
N B:VAL334 4.6 79.0 1.0
CA B:CYS432 4.7 94.1 1.0
CB B:ASN429 4.8 90.5 1.0
ND1 B:HIS424 4.8 0.7 1.0
O B:CYS427 4.9 0.8 1.0
CG2 B:VAL334 5.0 77.6 1.0

Reference:

F.Yuan, Z.Q.Gao, V.Majerciak, L.Bai, M.L.Hu, X.X.Lin, Z.M.Zheng, Y.H.Dong, K.Lan. The Crystal Structure of Kshv ORF57 Reveals Dimeric Active Sites Important For Protein Stability and Function. Plos Pathog. V. 14 07232 2018.
ISSN: ESSN 1553-7374
PubMed: 30096191
DOI: 10.1371/JOURNAL.PPAT.1007232
Page generated: Wed Dec 16 11:25:44 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy