Atomistry » Zinc » PDB 5yq2-5z86 » 5z2v
Atomistry »
  Zinc »
    PDB 5yq2-5z86 »
      5z2v »

Zinc in PDB 5z2v: Crystal Structure of Recr From Pseudomonas Aeruginosa PAO1

Protein crystallography data

The structure of Crystal Structure of Recr From Pseudomonas Aeruginosa PAO1, PDB code: 5z2v was solved by S.Che, Q.Zhang, M.Bartlam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.20
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 70.075, 70.075, 369.022, 90.00, 90.00, 120.00
R / Rfree (%) 17.8 / 21.3

Other elements in 5z2v:

The structure of Crystal Structure of Recr From Pseudomonas Aeruginosa PAO1 also contains other interesting chemical elements:

Sodium (Na) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Recr From Pseudomonas Aeruginosa PAO1 (pdb code 5z2v). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Recr From Pseudomonas Aeruginosa PAO1, PDB code: 5z2v:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 5z2v

Go back to Zinc Binding Sites List in 5z2v
Zinc binding site 1 out of 2 in the Crystal Structure of Recr From Pseudomonas Aeruginosa PAO1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Recr From Pseudomonas Aeruginosa PAO1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:19.8
occ:1.00
SG A:CYS69 2.3 21.9 1.0
SG A:CYS72 2.3 20.6 1.0
SG A:CYS60 2.3 17.0 1.0
SG A:CYS57 2.3 23.8 1.0
CB A:CYS57 3.2 20.4 1.0
CB A:CYS72 3.2 24.2 1.0
CB A:CYS60 3.3 18.0 1.0
CB A:CYS69 3.3 29.2 1.0
N A:CYS60 3.7 20.7 1.0
O A:HOH364 3.8 23.4 1.0
N A:CYS69 3.8 28.5 1.0
CA A:CYS60 4.1 21.0 1.0
N A:CYS72 4.1 25.0 1.0
CA A:CYS69 4.2 27.7 1.0
CG2 A:THR62 4.2 18.3 1.0
O A:HOH360 4.2 20.6 1.0
CA A:CYS72 4.3 24.4 1.0
CA A:CYS57 4.6 22.9 1.0
CB A:GLN59 4.7 32.6 1.0
C A:CYS60 4.8 18.8 1.0
N A:ARG61 4.8 18.9 1.0
C A:CYS69 4.8 24.4 1.0
C A:GLN59 4.8 25.2 1.0
O A:CYS69 4.9 26.5 1.0

Zinc binding site 2 out of 2 in 5z2v

Go back to Zinc Binding Sites List in 5z2v
Zinc binding site 2 out of 2 in the Crystal Structure of Recr From Pseudomonas Aeruginosa PAO1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Recr From Pseudomonas Aeruginosa PAO1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn201

b:19.7
occ:1.00
SG B:CYS72 2.3 19.9 1.0
SG B:CYS69 2.3 25.3 1.0
SG B:CYS60 2.3 17.5 1.0
SG B:CYS57 2.3 17.9 1.0
CB B:CYS57 3.2 19.4 1.0
CB B:CYS60 3.2 20.1 1.0
CB B:CYS72 3.2 24.0 1.0
CB B:CYS69 3.4 34.0 1.0
N B:CYS60 3.7 20.4 1.0
O B:HOH358 3.7 19.9 1.0
N B:CYS69 3.9 35.2 1.0
N B:CYS72 4.0 25.3 1.0
CA B:CYS60 4.0 20.0 1.0
O B:HOH354 4.0 20.9 1.0
CA B:CYS72 4.2 24.8 1.0
CA B:CYS69 4.2 34.7 1.0
CG2 B:THR62 4.3 20.7 1.0
CB B:GLN59 4.6 29.3 1.0
CA B:CYS57 4.7 20.5 1.0
C B:CYS60 4.8 17.9 1.0
C B:GLN59 4.8 25.5 1.0
N B:ARG61 4.8 17.8 1.0
C B:CYS69 4.9 31.8 1.0
O B:CYS69 5.0 28.6 1.0

Reference:

S.Che, Y.Chen, Y.Liang, Q.Zhang, M.Bartlam. Crystal Structure of Recr, A Member of the Recfor Dna-Repair Pathway, From Pseudomonas Aeruginosa PAO1. Acta Crystallogr F Struct V. 74 222 2018BIOL Commun.
ISSN: ESSN 2053-230X
PubMed: 29633970
DOI: 10.1107/S2053230X18003503
Page generated: Wed Dec 16 11:24:55 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy