Zinc in PDB 5y1x: Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with Actinonin

The structure of Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with Actinonin, PDB code: 5y1x was solved by A.K.Marapaka, A.Addlagatta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.66 / 1.55
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	75.723, 109.623, 113.134, 90.00, 90.00, 90.00
R / Rfree (%)	18.9 / 22.6

The structure of Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with Actinonin also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Zinc atom in the Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with Actinonin (pdb code 5y1x). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with Actinonin, PDB code: 5y1x:

Zinc binding site 1 out of 1 in the Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with Actinonin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with Actinonin within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1101 b:23.5 occ:1.00 OE1 A:GLU519 2.0 23.5 1.0 NE2 A:HIS500 2.1 19.9 1.0 NE2 A:HIS496 2.1 21.9 1.0 O4 A:BB21103 2.2 24.0 1.0 O2 A:BB21103 2.2 23.8 1.0 CD A:GLU519 2.7 24.8 1.0 OE2 A:GLU519 2.8 23.8 1.0 C3 A:BB21103 2.8 24.5 1.0 N1 A:BB21103 2.9 22.4 1.0 CD2 A:HIS496 3.0 23.1 1.0 CE1 A:HIS500 3.0 20.0 1.0 CD2 A:HIS500 3.1 20.6 1.0 CE1 A:HIS496 3.1 22.2 1.0 O A:HOH1370 3.9 31.0 1.0 OH A:TYR580 4.1 24.1 1.0 ND1 A:HIS500 4.2 19.6 1.0 CG A:HIS496 4.2 22.0 1.0 OE1 A:GLU463 4.2 22.4 1.0 ND1 A:HIS496 4.2 21.4 1.0 CG A:HIS500 4.2 20.4 1.0 CG A:GLU519 4.2 22.5 1.0 C5 A:BB21103 4.2 25.7 1.0 CE2 A:TYR580 4.3 21.3 1.0 O A:HOH1203 4.3 23.0 1.0 OE1 A:GLU497 4.5 24.4 1.0 CZ A:TYR580 4.6 21.7 1.0 C6 A:BB21103 4.7 27.1 1.0 CD A:GLU463 4.7 21.9 1.0 NZ A:LYS518 4.7 21.7 1.0 OE2 A:GLU463 4.8 22.8 1.0 CG2 A:THR522 4.8 22.7 1.0 OE2 A:GLU497 4.8 25.1 1.0 CB A:GLU519 4.8 22.2 1.0 CA A:GLU519 4.9 20.8 1.0

A.K.Marapaka, A.Addlagatta. Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with Actinonin To Be Published.