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Zinc in PDB 5xwe: Structure of A Three Finger Toxin From Ophiophagus Hannah Venom

Protein crystallography data

The structure of Structure of A Three Finger Toxin From Ophiophagus Hannah Venom, PDB code: 5xwe was solved by C.Jobichen, A.Roy, R.M.Kini, J.Sivaraman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.93 / 1.80
Space group P 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 39.480, 18.183, 77.190, 90.00, 104.75, 90.00
R / Rfree (%) 24.5 / 28.3

Other elements in 5xwe:

The structure of Structure of A Three Finger Toxin From Ophiophagus Hannah Venom also contains other interesting chemical elements:

Chlorine (Cl) 5 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of A Three Finger Toxin From Ophiophagus Hannah Venom (pdb code 5xwe). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of A Three Finger Toxin From Ophiophagus Hannah Venom, PDB code: 5xwe:

Zinc binding site 1 out of 1 in 5xwe

Go back to Zinc Binding Sites List in 5xwe
Zinc binding site 1 out of 1 in the Structure of A Three Finger Toxin From Ophiophagus Hannah Venom


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of A Three Finger Toxin From Ophiophagus Hannah Venom within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn104

b:14.5
occ:1.00
CL B:CL103 2.0 29.9 1.0
OD2 B:ASP58 2.0 28.4 1.0
CL B:CL102 2.0 35.5 1.0
O B:HOH228 2.4 28.0 1.0
CG B:ASP58 2.8 23.4 1.0
OD1 B:ASP58 3.0 21.4 1.0
O B:HOH230 3.8 27.3 1.0
NH1 B:ARG1 4.3 23.6 1.0
CB B:ASP58 4.3 22.9 1.0
CA B:ARG1 4.7 20.8 1.0
N B:ARG1 4.7 25.1 1.0
N B:ILE2 5.0 22.1 1.0

Reference:

C.Jobichen, A.Roy, R.M.Kin, J.Sivaraman. Structure of A Three Finger Toxin From Ophiophagus Hannah Venom To Be Published.
Page generated: Mon Oct 28 15:15:23 2024

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