Zinc in PDB 5wy5: Crystal Structure of MAGEG1 and NSE1 Complex

The structure of Crystal Structure of MAGEG1 and NSE1 Complex, PDB code: 5wy5 was solved by M.Yang, J.Gao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.36 / 2.92
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	83.257, 154.327, 53.726, 90.00, 90.00, 90.00
R / Rfree (%)	21.6 / 27

The structure of Crystal Structure of MAGEG1 and NSE1 Complex also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Zinc atom in the Crystal Structure of MAGEG1 and NSE1 Complex (pdb code 5wy5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of MAGEG1 and NSE1 Complex, PDB code: 5wy5:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of MAGEG1 and NSE1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of MAGEG1 and NSE1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:65.4 occ:1.00 SG A:CYS191 2.3 62.3 1.0 CB A:CYS194 2.4 35.1 1.0 SG A:CYS215 2.4 52.0 1.0 CD2 A:HIS212 2.4 70.3 1.0 SG A:CYS194 2.5 0.3 1.0 CB A:CYS191 2.8 66.5 1.0 CG A:HIS212 3.2 74.9 1.0 NE2 A:HIS212 3.4 66.5 1.0 CA A:CYS194 3.6 58.9 1.0 N A:CYS194 3.6 69.1 1.0 CB A:HIS212 3.7 75.7 1.0 CB A:CYS215 3.8 58.1 1.0 O A:ASN192 3.9 88.6 1.0 N A:HIS212 4.1 72.6 1.0 CA A:CYS191 4.3 67.7 1.0 ND1 A:HIS212 4.3 77.8 1.0 CE1 A:HIS212 4.4 74.7 1.0 C A:CYS194 4.5 72.8 1.0 CA A:HIS212 4.5 75.1 1.0 N A:HIS195 4.6 75.9 1.0 CB A:ILE193 4.9 58.1 1.0 C A:ILE193 4.9 74.2 1.0 C A:CYS191 5.0 70.1 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of MAGEG1 and NSE1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of MAGEG1 and NSE1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:87.8 occ:1.00 SG A:CYS207 2.3 97.9 1.0 SG A:CYS228 2.3 87.8 1.0 SG A:CYS231 2.5 0.5 1.0 SG A:CYS204 2.5 89.1 1.0 CB A:CYS207 2.8 0.8 1.0 CB A:CYS204 3.1 93.5 1.0 O A:HIS230 3.1 0.7 1.0 N A:CYS207 3.1 0.8 1.0 CB A:CYS228 3.5 84.8 1.0 CA A:CYS207 3.6 98.7 1.0 CB A:CYS231 3.6 0.6 1.0 C A:THR206 4.3 1.0 1.0 C A:HIS230 4.3 0.3 1.0 CB A:THR206 4.4 0.8 1.0 CA A:CYS204 4.6 94.2 1.0 N A:THR206 4.7 0.2 1.0 C A:CYS207 4.7 99.6 1.0 CA A:THR206 4.7 0.1 1.0 CA A:CYS231 4.8 0.9 1.0 CB A:ILE209 4.8 78.0 1.0 CA A:CYS228 4.9 77.7 1.0

J.M.Doyle, J.Gao, J.Wang, M.Yang, P.R.Potts. Mage-Ring Protein Complexes Comprise A Family of E3 Ubiquitin Ligases. Mol.Cell V. 39 963 2010.
ISSN: ISSN 1097-2765
PubMed: 20864041
DOI: 10.1016/J.MOLCEL.2010.08.029