Zinc in PDB 5whg: VMS1 Mitochondrial Localization Core

The structure of VMS1 Mitochondrial Localization Core, PDB code: 5whg was solved by E.K.Fredrickson, H.L.Schubert, J.Rutter, C.P.Hill, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.06 / 2.70
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	62.864, 62.864, 154.383, 90.00, 90.00, 120.00
R / Rfree (%)	18.7 / 24.5

The binding sites of Zinc atom in the VMS1 Mitochondrial Localization Core (pdb code 5whg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the VMS1 Mitochondrial Localization Core, PDB code: 5whg:

Zinc binding site 1 out of 1 in the VMS1 Mitochondrial Localization Core


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of VMS1 Mitochondrial Localization Core within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:0.2 occ:1.00 ND1 A:HIS96 1.9 0.4 1.0 SG A:CYS77 2.3 0.3 1.0 SG A:CYS74 2.4 0.7 1.0 NE2 A:HIS90 2.6 0.8 1.0 CE1 A:HIS96 2.9 0.0 1.0 CG A:HIS96 2.9 0.1 1.0 CE1 A:HIS90 3.2 0.8 1.0 CB A:HIS96 3.3 0.5 1.0 CB A:CYS74 3.5 0.0 1.0 CD2 A:HIS90 3.5 0.7 1.0 CA A:HIS96 3.6 0.7 1.0 CB A:CYS77 3.6 0.3 1.0 CG1 A:VAL76 3.9 94.8 1.0 NE2 A:HIS96 4.0 0.9 1.0 CD2 A:HIS96 4.0 0.7 1.0 ND1 A:HIS90 4.3 0.1 1.0 N A:CYS77 4.4 0.2 1.0 CG A:HIS90 4.4 0.9 1.0 O A:HIS96 4.6 0.6 1.0 O A:HIS90 4.6 0.9 1.0 C A:HIS96 4.6 0.8 1.0 N A:HIS96 4.6 0.4 1.0 CA A:CYS77 4.6 0.3 1.0 CA A:CYS74 4.8 1.0 1.0

J.R.Nielson, E.K.Fredrickson, T.C.Waller, O.Z.Rendon, H.L.Schubert, Z.Lin, C.P.Hill, J.Rutter. Sterol Oxidation Mediates Stress-Responsive VMS1 Translocation to Mitochondria. Mol. Cell V. 68 673 2017.
ISSN: ISSN 1097-4164
PubMed: 29149595
DOI: 10.1016/J.MOLCEL.2017.10.022