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Zinc in PDB 5wgs: Crystal Structure of Mala' H253F, Premalbrancheamide Complex

Protein crystallography data

The structure of Crystal Structure of Mala' H253F, Premalbrancheamide Complex, PDB code: 5wgs was solved by A.E.Fraley, J.L.Smith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.17 / 2.34
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 79.527, 121.149, 170.118, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 23.4

Other elements in 5wgs:

The structure of Crystal Structure of Mala' H253F, Premalbrancheamide Complex also contains other interesting chemical elements:

Cadmium (Cd) 3 atoms
Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Mala' H253F, Premalbrancheamide Complex (pdb code 5wgs). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Mala' H253F, Premalbrancheamide Complex, PDB code: 5wgs:

Zinc binding site 1 out of 1 in 5wgs

Go back to Zinc Binding Sites List in 5wgs
Zinc binding site 1 out of 1 in the Crystal Structure of Mala' H253F, Premalbrancheamide Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Mala' H253F, Premalbrancheamide Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn705

b:47.1
occ:1.00
SG A:CYS616 2.3 58.9 1.0
SG A:CYS600 2.3 52.1 1.0
SG A:CYS613 2.4 65.6 1.0
SG A:CYS597 2.5 52.2 1.0
CB A:CYS613 3.2 62.4 1.0
CB A:CYS597 3.2 45.9 1.0
CB A:CYS616 3.2 51.4 1.0
CB A:CYS600 3.5 54.5 1.0
N A:CYS616 3.7 55.1 1.0
N A:CYS600 3.9 54.8 1.0
CA A:CYS616 4.0 53.5 1.0
CA A:CYS600 4.3 50.7 1.0
CB A:LEU618 4.5 69.4 1.0
C A:CYS616 4.7 60.5 1.0
CA A:CYS613 4.7 51.2 1.0
CA A:CYS597 4.7 61.0 1.0
CB A:SER615 4.7 59.4 1.0
N A:GLY617 4.7 58.3 1.0
N A:LEU618 4.8 58.6 1.0
C A:SER615 4.8 54.4 1.0
C A:GLY599 4.8 62.0 1.0
CB A:ALA602 4.9 55.7 1.0
O A:HOH889 4.9 42.0 1.0
C A:CYS600 5.0 56.0 1.0

Reference:

A.E.Fraley, M.Garcia-Borras, A.Tripathi, D.Khare, E.V.Mercado-Marin, H.Tran, Q.Dan, G.P.Webb, K.R.Watts, P.Crews, R.Sarpong, R.M.Williams, J.L.Smith, K.N.Houk, D.H.Sherman. Function and Structure of Mala/Mala', Iterative Halogenases For Late-Stage C-H Functionalization of Indole Alkaloids. J. Am. Chem. Soc. V. 139 12060 2017.
ISSN: ESSN 1520-5126
PubMed: 28777910
DOI: 10.1021/JACS.7B06773
Page generated: Wed Dec 16 11:16:30 2020

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