Zinc in PDB 5vm2: Crystal Structure of ECK1772, An Oxidoreductase/Dehydrogenase of Unknown Specificity Involved in Membrane Biogenesis From Escherichia Coli

The structure of Crystal Structure of ECK1772, An Oxidoreductase/Dehydrogenase of Unknown Specificity Involved in Membrane Biogenesis From Escherichia Coli, PDB code: 5vm2 was solved by P.J.Stogios, T.Skarina, C.Mcchesney, R.Di Leo, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.31 / 1.98
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	63.994, 70.888, 149.460, 90.00, 90.00, 90.00
R / Rfree (%)	18.1 / 22.5

The structure of Crystal Structure of ECK1772, An Oxidoreductase/Dehydrogenase of Unknown Specificity Involved in Membrane Biogenesis From Escherichia Coli also contains other interesting chemical elements:

Magnesium	(Mg)	2 atoms
Chlorine	(Cl)	1 atom

The binding sites of Zinc atom in the Crystal Structure of ECK1772, An Oxidoreductase/Dehydrogenase of Unknown Specificity Involved in Membrane Biogenesis From Escherichia Coli (pdb code 5vm2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of ECK1772, An Oxidoreductase/Dehydrogenase of Unknown Specificity Involved in Membrane Biogenesis From Escherichia Coli, PDB code: 5vm2:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of ECK1772, An Oxidoreductase/Dehydrogenase of Unknown Specificity Involved in Membrane Biogenesis From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of ECK1772, An Oxidoreductase/Dehydrogenase of Unknown Specificity Involved in Membrane Biogenesis From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn402 b:34.5 occ:1.00 SG A:CYS109 2.3 34.0 1.0 SG A:CYS98 2.3 35.8 1.0 SG A:CYS95 2.4 37.3 1.0 SG A:CYS101 2.4 34.9 1.0 CB A:CYS109 3.2 33.4 1.0 CB A:CYS98 3.3 36.9 1.0 CB A:CYS95 3.4 38.2 1.0 CB A:CYS101 3.5 36.6 1.0 N A:CYS95 3.6 36.4 1.0 N A:CYS98 3.7 40.8 1.0 N A:GLY96 3.8 37.1 1.0 CA A:CYS95 3.9 36.7 1.0 CA A:CYS109 4.0 34.5 1.0 CA A:CYS98 4.1 40.5 1.0 C A:CYS95 4.2 38.9 1.0 N A:CYS101 4.2 33.0 1.0 N A:HIS97 4.4 40.9 1.0 CA A:CYS101 4.4 34.5 1.0 CD A:PRO110 4.5 41.5 1.0 O A:HOH506 4.5 46.5 1.0 C A:CYS98 4.7 42.0 1.0 C A:PRO94 4.7 35.6 1.0 CB A:PRO94 4.8 28.6 1.0 CA A:GLY96 4.8 38.0 1.0 C A:CYS109 4.8 36.4 1.0 O A:CYS98 4.9 40.4 1.0 C A:HIS97 4.9 43.4 1.0 N A:PRO110 4.9 39.3 1.0 C A:GLY96 5.0 41.8 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of ECK1772, An Oxidoreductase/Dehydrogenase of Unknown Specificity Involved in Membrane Biogenesis From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of ECK1772, An Oxidoreductase/Dehydrogenase of Unknown Specificity Involved in Membrane Biogenesis From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn402 b:36.4 occ:1.00 SG B:CYS109 2.3 35.8 1.0 SG B:CYS95 2.4 39.4 1.0 SG B:CYS101 2.4 32.6 1.0 SG B:CYS98 2.4 34.7 1.0 CB B:CYS109 3.1 31.4 1.0 CB B:CYS98 3.2 40.0 1.0 CB B:CYS101 3.5 32.5 1.0 CB B:CYS95 3.5 39.4 1.0 N B:CYS95 3.7 34.6 1.0 N B:CYS98 3.7 40.0 1.0 N B:GLY96 3.8 39.2 1.0 CA B:CYS95 4.0 38.4 1.0 CA B:CYS98 4.0 41.6 1.0 CA B:CYS109 4.0 34.1 1.0 N B:CYS101 4.2 28.6 1.0 C B:CYS95 4.3 40.8 1.0 CA B:CYS101 4.4 30.8 1.0 N B:HIS97 4.4 40.4 1.0 CB B:PRO94 4.6 30.0 1.0 C B:CYS98 4.7 39.4 1.0 CD B:PRO110 4.7 38.1 1.0 CA B:GLY96 4.7 38.5 1.0 C B:PRO94 4.8 33.9 1.0 C B:CYS109 4.8 33.5 1.0 O B:CYS98 4.8 36.1 1.0 C B:HIS97 4.9 43.0 1.0 C B:GLY96 5.0 41.4 1.0

P.J.Stogios, P.J.Stogios, T.Skarina, C.Mcchesney, R.Di Leo, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid). N/A N/A.