Zinc in PDB 5vld: Crystal Structure of Medicago Truncatula L-Histidinol Dehydrogenase in Complex with L-Histidine and Nad+
Enzymatic activity of Crystal Structure of Medicago Truncatula L-Histidinol Dehydrogenase in Complex with L-Histidine and Nad+
All present enzymatic activity of Crystal Structure of Medicago Truncatula L-Histidinol Dehydrogenase in Complex with L-Histidine and Nad+:
1.1.1.23;
1.1.1.23;
Protein crystallography data
The structure of Crystal Structure of Medicago Truncatula L-Histidinol Dehydrogenase in Complex with L-Histidine and Nad+, PDB code: 5vld
was solved by
M.Ruszkowski,
Z.Dauter,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 48.89 / 2.59 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 103.654, 139.095, 103.558, 90.00, 119.47, 90.00 |
| R / Rfree (%) | 22.1 / 26.4 |
Zinc Binding Sites:
The binding sites of Zinc atom in the Crystal Structure of Medicago Truncatula L-Histidinol Dehydrogenase in Complex with L-Histidine and Nad+
(pdb code 5vld). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Crystal Structure of Medicago Truncatula L-Histidinol Dehydrogenase in Complex with L-Histidine and Nad+, PDB code: 5vld:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Zinc where determined in the Crystal Structure of Medicago Truncatula L-Histidinol Dehydrogenase in Complex with L-Histidine and Nad+, PDB code: 5vld:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;
Zinc binding site 1 out of 6 in 5vld
Go back to
Zinc Binding Sites List in 5vld
Zinc binding site 1 out
of 6 in the Crystal Structure of Medicago Truncatula L-Histidinol Dehydrogenase in Complex with L-Histidine and Nad+
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Crystal Structure of Medicago Truncatula L-Histidinol Dehydrogenase in Complex with L-Histidine and Nad+ within 5.0Å range:
|
Zinc binding site 2 out of 6 in 5vld
Go back to
Zinc Binding Sites List in 5vld
Zinc binding site 2 out
of 6 in the Crystal Structure of Medicago Truncatula L-Histidinol Dehydrogenase in Complex with L-Histidine and Nad+
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Crystal Structure of Medicago Truncatula L-Histidinol Dehydrogenase in Complex with L-Histidine and Nad+ within 5.0Å range:
|
Zinc binding site 3 out of 6 in 5vld
Go back to
Zinc Binding Sites List in 5vld
Zinc binding site 3 out
of 6 in the Crystal Structure of Medicago Truncatula L-Histidinol Dehydrogenase in Complex with L-Histidine and Nad+
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Crystal Structure of Medicago Truncatula L-Histidinol Dehydrogenase in Complex with L-Histidine and Nad+ within 5.0Å range:
|
Zinc binding site 4 out of 6 in 5vld
Go back to
Zinc Binding Sites List in 5vld
Zinc binding site 4 out
of 6 in the Crystal Structure of Medicago Truncatula L-Histidinol Dehydrogenase in Complex with L-Histidine and Nad+
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Crystal Structure of Medicago Truncatula L-Histidinol Dehydrogenase in Complex with L-Histidine and Nad+ within 5.0Å range:
|
Zinc binding site 5 out of 6 in 5vld
Go back to
Zinc Binding Sites List in 5vld
Zinc binding site 5 out
of 6 in the Crystal Structure of Medicago Truncatula L-Histidinol Dehydrogenase in Complex with L-Histidine and Nad+
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Crystal Structure of Medicago Truncatula L-Histidinol Dehydrogenase in Complex with L-Histidine and Nad+ within 5.0Å range:
|
Zinc binding site 6 out of 6 in 5vld
Go back to
Zinc Binding Sites List in 5vld
Zinc binding site 6 out
of 6 in the Crystal Structure of Medicago Truncatula L-Histidinol Dehydrogenase in Complex with L-Histidine and Nad+
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Crystal Structure of Medicago Truncatula L-Histidinol Dehydrogenase in Complex with L-Histidine and Nad+ within 5.0Å range:
|
Reference:
M.Ruszkowski,
Z.Dauter.
Structures of Medicago Truncatula L-Histidinol Dehydrogenase Show Rearrangements Required For Nad(+) Binding and the Cofactor Positioned to Accept A Hydride. Sci Rep V. 7 10476 2017.
ISSN: ESSN 2045-2322
PubMed: 28874718
DOI: 10.1038/S41598-017-10859-0
Page generated: Wed Dec 16 11:11:06 2020
ISSN: ESSN 2045-2322
PubMed: 28874718
DOI: 10.1038/S41598-017-10859-0
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