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Zinc in PDB 5uqa: Insulin with Proline Analog Fzp at Position B28 in the R6 State

Protein crystallography data

The structure of Insulin with Proline Analog Fzp at Position B28 in the R6 State, PDB code: 5uqa was solved by S.A.Lieblich, K.Y.Fang, D.A.Tirrell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.53 / 1.31
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 46.936, 61.258, 60.390, 90.00, 111.69, 90.00
R / Rfree (%) 15.2 / 18.2

Other elements in 5uqa:

The structure of Insulin with Proline Analog Fzp at Position B28 in the R6 State also contains other interesting chemical elements:

Fluorine (F) 6 atoms
Chlorine (Cl) 2 atoms
Sodium (Na) 6 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Insulin with Proline Analog Fzp at Position B28 in the R6 State (pdb code 5uqa). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Insulin with Proline Analog Fzp at Position B28 in the R6 State, PDB code: 5uqa:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 5uqa

Go back to Zinc Binding Sites List in 5uqa
Zinc binding site 1 out of 2 in the Insulin with Proline Analog Fzp at Position B28 in the R6 State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Insulin with Proline Analog Fzp at Position B28 in the R6 State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:12.5
occ:1.00
NE2 F:HIS10 2.0 11.9 1.0
NE2 J:HIS10 2.0 12.7 1.0
NE2 B:HIS10 2.0 11.9 1.0
CL B:CL302 2.2 13.7 1.0
CE1 F:HIS10 3.0 14.4 1.0
CE1 J:HIS10 3.0 14.0 1.0
CE1 B:HIS10 3.0 17.1 1.0
CD2 J:HIS10 3.0 12.9 1.0
CD2 F:HIS10 3.0 11.8 1.0
CD2 B:HIS10 3.0 12.1 1.0
ND1 F:HIS10 4.1 14.4 1.0
ND1 J:HIS10 4.1 14.1 1.0
ND1 B:HIS10 4.1 17.3 1.0
CG F:HIS10 4.2 12.3 1.0
CG J:HIS10 4.2 11.1 1.0
CG B:HIS10 4.2 12.2 1.0
O B:LEU6 4.7 13.3 1.0
O F:LEU6 4.7 15.3 1.0
O F:HOH206 4.8 30.1 1.0
CB J:LEU6 4.8 13.1 1.0
O J:LEU6 4.8 12.5 1.0
CB B:LEU6 4.9 13.7 1.0
CB F:LEU6 4.9 16.3 1.0

Zinc binding site 2 out of 2 in 5uqa

Go back to Zinc Binding Sites List in 5uqa
Zinc binding site 2 out of 2 in the Insulin with Proline Analog Fzp at Position B28 in the R6 State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Insulin with Proline Analog Fzp at Position B28 in the R6 State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn101

b:12.4
occ:1.00
NE2 H:HIS10 2.0 11.3 1.0
NE2 L:HIS10 2.0 11.5 1.0
NE2 D:HIS10 2.0 11.9 1.0
CL H:CL101 2.2 14.4 1.0
CE1 H:HIS10 3.0 14.8 1.0
CD2 H:HIS10 3.0 11.8 1.0
CE1 L:HIS10 3.0 15.0 1.0
CE1 D:HIS10 3.0 14.2 1.0
CD2 D:HIS10 3.0 12.2 1.0
CD2 L:HIS10 3.0 10.5 1.0
ND1 H:HIS10 4.1 15.4 1.0
ND1 L:HIS10 4.1 14.7 1.0
CG H:HIS10 4.1 12.0 1.0
ND1 D:HIS10 4.1 14.9 1.0
CG L:HIS10 4.2 11.6 1.0
CG D:HIS10 4.2 11.4 1.0
O H:LEU6 4.8 14.5 1.0
O D:LEU6 4.8 15.5 1.0
O L:LEU6 4.8 13.7 1.0
CB H:LEU6 4.9 13.7 1.0
CB L:LEU6 4.9 13.6 1.0
CB D:LEU6 5.0 15.4 1.0
O L:HOH202 5.0 34.0 1.0

Reference:

S.A.Lieblich, K.Y.Fang, D.A.Tirrell. Insulin with Proline Analog Fzp at Position B28 in the R6 State To Be Published.
Page generated: Wed Dec 16 11:06:10 2020

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