Zinc in PDB 5u1c: Structure of Tetrameric Hiv-1 Strand Transfer Complex Intasome

The structure of Structure of Tetrameric Hiv-1 Strand Transfer Complex Intasome also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Zinc atom in the Structure of Tetrameric Hiv-1 Strand Transfer Complex Intasome (pdb code 5u1c). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Tetrameric Hiv-1 Strand Transfer Complex Intasome, PDB code: 5u1c:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of Tetrameric Hiv-1 Strand Transfer Complex Intasome


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Tetrameric Hiv-1 Strand Transfer Complex Intasome within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn500 b:12.7 occ:1.00 ND1 A:HIS16 2.1 11.7 1.0 NE2 A:HIS12 2.2 13.1 1.0 CE1 A:HIS12 2.4 13.1 1.0 SG A:CYS43 2.4 10.2 1.0 SG A:CYS40 3.0 11.7 1.0 CG A:HIS16 3.0 11.7 1.0 CD2 A:HIS12 3.1 13.1 1.0 CE1 A:HIS16 3.2 11.7 1.0 CB A:HIS16 3.2 11.7 1.0 ND1 A:HIS12 3.3 13.1 1.0 CA A:HIS16 3.4 11.7 1.0 CB A:CYS40 3.7 11.7 1.0 CG A:HIS12 3.7 13.1 1.0 CB A:CYS43 3.9 10.2 1.0 C A:HIS16 4.2 11.7 1.0 CD2 A:HIS16 4.2 11.7 1.0 O A:HIS12 4.2 13.1 1.0 NE2 A:HIS16 4.2 11.7 1.0 N A:HIS16 4.5 11.7 1.0 O A:HIS16 4.5 11.7 1.0 N A:CYS43 4.7 10.2 1.0 O A:SER17 4.8 12.4 1.0 CA A:CYS43 4.9 10.2 1.0 C A:HIS12 4.9 13.1 1.0 N A:SER17 5.0 12.4 1.0

Zinc binding site 2 out of 2 in the Structure of Tetrameric Hiv-1 Strand Transfer Complex Intasome


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Tetrameric Hiv-1 Strand Transfer Complex Intasome within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn500 b:13.5 occ:1.00 ND1 C:HIS16 2.1 13.3 1.0 NE2 C:HIS12 2.2 14.8 1.0 CE1 C:HIS12 2.4 14.8 1.0 SG C:CYS43 2.4 11.3 1.0 SG C:CYS40 3.0 12.8 1.0 CG C:HIS16 3.0 13.3 1.0 CD2 C:HIS12 3.1 14.8 1.0 CE1 C:HIS16 3.2 13.3 1.0 CB C:HIS16 3.2 13.3 1.0 ND1 C:HIS12 3.3 14.8 1.0 CA C:HIS16 3.4 13.3 1.0 CB C:CYS40 3.7 12.8 1.0 CG C:HIS12 3.7 14.8 1.0 CB C:CYS43 3.9 11.3 1.0 C C:HIS16 4.2 13.3 1.0 CD2 C:HIS16 4.2 13.3 1.0 O C:HIS12 4.2 14.8 1.0 NE2 C:HIS16 4.2 13.3 1.0 N C:HIS16 4.5 13.3 1.0 O C:HIS16 4.5 13.3 1.0 N C:CYS43 4.7 11.3 1.0 O C:SER17 4.8 13.9 1.0 CA C:CYS43 4.9 11.3 1.0 C C:HIS12 4.9 14.8 1.0 N C:SER17 4.9 13.9 1.0

D.O.Passos, M.Li, R.Yang, S.V.Rebensburg, R.Ghirlando, Y.Jeon, N.Shkriabai, M.Kvaratskhelia, R.Craigie, D.Lyumkis. Cryo-Em Structures and Atomic Model of the Hiv-1 Strand Transfer Complex Intasome. Science V. 355 89 2017.
ISSN: ESSN 1095-9203
PubMed: 28059769
DOI: 10.1126/SCIENCE.AAH5163