Zinc in PDB 5tnx: Crystal Structure of Alcohol Dehydrogenase Zinc-Binding Domain Protein From Burkholderia Ambifaria

Protein crystallography data

The structure of Crystal Structure of Alcohol Dehydrogenase Zinc-Binding Domain Protein From Burkholderia Ambifaria, PDB code: 5tnx was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.55 / 1.70
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 79.060, 92.650, 120.410, 90.00, 90.00, 90.00
R / Rfree (%) 14.8 / 17.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Alcohol Dehydrogenase Zinc-Binding Domain Protein From Burkholderia Ambifaria (pdb code 5tnx). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Alcohol Dehydrogenase Zinc-Binding Domain Protein From Burkholderia Ambifaria, PDB code: 5tnx:

Zinc binding site 1 out of 1 in 5tnx

Go back to Zinc Binding Sites List in 5tnx
Zinc binding site 1 out of 1 in the Crystal Structure of Alcohol Dehydrogenase Zinc-Binding Domain Protein From Burkholderia Ambifaria


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Alcohol Dehydrogenase Zinc-Binding Domain Protein From Burkholderia Ambifaria within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn400

b:19.7
occ:1.00
SG A:CYS111 2.3 19.2 1.0
SG A:CYS97 2.3 21.7 1.0
SG A:CYS103 2.3 19.8 1.0
SG A:CYS100 2.3 21.5 1.0
CB A:CYS111 3.2 18.3 1.0
CB A:CYS100 3.4 23.3 1.0
CB A:CYS97 3.4 22.6 1.0
CB A:CYS103 3.4 20.6 1.0
N A:CYS97 3.5 18.1 1.0
CA A:CYS111 3.6 17.4 1.0
N A:GLY98 3.7 26.4 1.0
N A:CYS100 3.8 27.9 1.0
CA A:CYS97 3.8 20.7 1.0
N A:ARG112 4.0 19.9 1.0
CA A:CYS100 4.1 20.4 1.0
C A:CYS97 4.2 27.2 1.0
C A:CYS111 4.2 22.8 1.0
N A:CYS103 4.3 17.2 1.0
N A:HIS99 4.3 26.3 1.0
CA A:CYS103 4.4 19.6 1.0
C A:ALA96 4.6 20.5 1.0
CA A:GLY98 4.7 29.1 1.0
O A:HOH632 4.7 46.7 1.0
N A:GLN113 4.8 23.2 1.0
C A:CYS100 4.8 23.2 1.0
CB A:ALA96 4.9 19.8 1.0
N A:CYS111 4.9 17.9 1.0
C A:HIS99 4.9 31.0 1.0
O A:CYS100 4.9 24.7 1.0
C A:GLY98 4.9 30.4 1.0
CG A:GLN113 5.0 35.3 0.4
CA A:ALA96 5.0 19.3 1.0

Reference:

J.Abendroth, S.J.Mayclin, D.Lorimer, T.E.Edwards. Crystal Structure of Alcohol Dehydrogenase Zinc-Binding Domain Protein From Burkholderia Ambifaria To Be Published.
Page generated: Wed Dec 16 10:56:28 2020

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