Atomistry » Zinc » PDB 5t71-5th4 » 5tbn
Atomistry »
  Zinc »
    PDB 5t71-5th4 »
      5tbn »

Zinc in PDB 5tbn: Solution uc(Nmr) Structure of PHF20 Phd Domain in Complex with A Histone H3K4ME2 Peptide

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution uc(Nmr) Structure of PHF20 Phd Domain in Complex with A Histone H3K4ME2 Peptide (pdb code 5tbn). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution uc(Nmr) Structure of PHF20 Phd Domain in Complex with A Histone H3K4ME2 Peptide, PDB code: 5tbn:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 5tbn

Go back to Zinc Binding Sites List in 5tbn
Zinc binding site 1 out of 2 in the Solution uc(Nmr) Structure of PHF20 Phd Domain in Complex with A Histone H3K4ME2 Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution uc(Nmr) Structure of PHF20 Phd Domain in Complex with A Histone H3K4ME2 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn800

b:0.0
occ:1.00
SG A:CYS51 2.3 0.0 1.0
SG A:CYS23 2.3 0.0 1.0
SG A:CYS26 2.4 0.0 1.0
SG A:CYS48 2.4 0.0 1.0
H A:CYS26 2.9 0.0 1.0
HB2 A:CYS51 3.2 0.0 1.0
HB3 A:GLU25 3.2 0.0 1.0
H A:CYS48 3.3 0.0 1.0
CB A:CYS23 3.4 0.0 1.0
HB3 A:CYS48 3.4 0.0 1.0
CB A:CYS51 3.4 0.0 1.0
HB3 A:CYS23 3.4 0.0 1.0
HB3 A:CYS26 3.4 0.0 1.0
CB A:CYS26 3.4 0.0 1.0
HB2 A:CYS23 3.5 0.0 1.0
CB A:CYS48 3.5 0.0 1.0
HG12 A:VAL50 3.5 0.0 1.0
H A:CYS51 3.6 0.0 1.0
SG A:CYS28 3.6 0.0 1.0
HG A:CYS28 3.7 0.0 1.0
N A:CYS26 3.7 0.0 1.0
N A:CYS51 4.0 0.0 1.0
CA A:CYS26 4.1 0.0 1.0
N A:CYS48 4.2 0.0 1.0
HB3 A:CYS51 4.2 0.0 1.0
HB A:VAL50 4.3 0.0 1.0
H A:CYS28 4.3 0.0 1.0
H A:GLU25 4.3 0.0 1.0
CB A:GLU25 4.3 0.0 1.0
HB2 A:CYS48 4.3 0.0 1.0
CA A:CYS51 4.3 0.0 1.0
CA A:CYS48 4.3 0.0 1.0
HB2 A:CYS26 4.4 0.0 1.0
O A:CYS48 4.4 0.0 1.0
CG1 A:VAL50 4.5 0.0 1.0
HG3 A:GLU25 4.5 0.0 1.0
HG11 A:VAL50 4.7 0.0 1.0
H A:GLN27 4.7 0.0 1.0
C A:GLU25 4.7 0.0 1.0
C A:VAL50 4.8 0.0 1.0
C A:CYS48 4.8 0.0 1.0
C A:CYS26 4.8 0.0 1.0
CA A:CYS23 4.8 0.0 1.0
HA A:CYS51 4.8 0.0 1.0
CB A:VAL50 4.8 0.0 1.0
HB2 A:GLU25 4.8 0.0 1.0
HA A:THR47 4.9 0.0 1.0
CA A:GLU25 4.9 0.0 1.0
CG A:GLU25 4.9 0.0 1.0
N A:GLU25 4.9 0.0 1.0

Zinc binding site 2 out of 2 in 5tbn

Go back to Zinc Binding Sites List in 5tbn
Zinc binding site 2 out of 2 in the Solution uc(Nmr) Structure of PHF20 Phd Domain in Complex with A Histone H3K4ME2 Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution uc(Nmr) Structure of PHF20 Phd Domain in Complex with A Histone H3K4ME2 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn801

b:0.0
occ:1.00
ND1 A:HIS31 2.1 0.0 1.0
SG A:CYS34 2.3 0.0 1.0
SG A:CYS11 2.3 0.0 1.0
SG A:CYS9 2.3 0.0 1.0
HB2 A:CYS11 2.8 0.0 1.0
HB2 A:HIS31 3.0 0.0 1.0
CE1 A:HIS31 3.1 0.0 1.0
CG A:HIS31 3.1 0.0 1.0
CB A:CYS34 3.3 0.0 1.0
CB A:CYS11 3.3 0.0 1.0
HB2 A:CYS34 3.3 0.0 1.0
HD12 A:ILE10 3.3 0.0 1.0
HB3 A:CYS34 3.3 0.0 1.0
HE1 A:HIS31 3.3 0.0 1.0
HB3 A:CYS9 3.5 0.0 1.0
CB A:CYS9 3.5 0.0 1.0
CB A:HIS31 3.6 0.0 1.0
H A:HIS31 3.7 0.0 1.0
H A:CYS11 3.8 0.0 1.0
HB2 A:CYS9 3.8 0.0 1.0
HB3 A:CYS11 3.9 0.0 1.0
NE2 A:HIS31 4.2 0.0 1.0
CD2 A:HIS31 4.2 0.0 1.0
HD11 A:ILE10 4.2 0.0 1.0
CD1 A:ILE10 4.2 0.0 1.0
HB3 A:HIS31 4.3 0.0 1.0
N A:CYS11 4.4 0.0 1.0
HG13 A:ILE10 4.4 0.0 1.0
HG12 A:VAL13 4.4 0.0 1.0
CA A:CYS11 4.4 0.0 1.0
N A:HIS31 4.5 0.0 1.0
CA A:HIS31 4.6 0.0 1.0
HD21 A:ASN17 4.7 0.0 1.0
CA A:CYS34 4.7 0.0 1.0
O A:HIS31 4.8 0.0 1.0
HA A:CYS11 4.9 0.0 1.0
CA A:CYS9 4.9 0.0 1.0
H A:CYS34 4.9 0.0 1.0
H A:ILE10 4.9 0.0 1.0
HA A:CYS34 4.9 0.0 1.0
CG1 A:ILE10 4.9 0.0 1.0

Reference:

B.J.Klein, X.Wang, G.Cui, C.Yuan, M.V.Botuyan, K.Lin, Y.Lu, X.Wang, Y.Zhao, C.J.Bruns, G.Mer, X.Shi, T.G.Kutateladze. PHF20 Readers Link Methylation of Histone H3K4 and P53 with H4K16 Acetylation. Cell Rep V. 17 1158 2016.
ISSN: ESSN 2211-1247
PubMed: 27760318
DOI: 10.1016/J.CELREP.2016.09.056
Page generated: Mon Oct 28 08:24:55 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy