Zinc in PDB 5taj: Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin

Enzymatic activity of Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin

All present enzymatic activity of Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin:
3.4.24.27;

Protein crystallography data

The structure of Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin, PDB code: 5taj was solved by M.Dong, B.J.Bahnson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.42 / 2.03
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 93.335, 93.335, 130.612, 90.00, 90.00, 120.00
R / Rfree (%) 14.5 / 20.2

Other elements in 5taj:

The structure of Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin also contains other interesting chemical elements:

Calcium (Ca) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin (pdb code 5taj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin, PDB code: 5taj:

Zinc binding site 1 out of 1 in 5taj

Go back to Zinc Binding Sites List in 5taj
Zinc binding site 1 out of 1 in the Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn405

b:23.4
occ:1.00
OE2 A:GLU166 1.9 17.2 0.6
NE2 A:HIS146 2.1 22.2 1.0
NE2 A:HIS142 2.1 19.2 1.0
O A:HOH673 2.2 24.9 1.0
OE1 A:GLU166 2.4 21.6 0.4
OE1 A:GLU166 2.4 25.4 0.6
CD A:GLU166 2.5 20.9 0.6
CE1 A:HIS146 3.0 22.5 1.0
CE1 A:HIS142 3.0 19.3 1.0
CD2 A:HIS142 3.1 16.9 1.0
CD A:GLU166 3.1 21.3 0.4
CD2 A:HIS146 3.1 18.4 1.0
O A:HOH505 3.1 45.3 1.0
O A:HOH674 3.1 46.4 1.0
OE2 A:GLU166 3.1 25.6 0.4
OH A:TYR157 3.9 26.8 0.5
CG A:GLU166 4.0 19.3 0.6
ND1 A:HIS146 4.1 23.0 1.0
ND1 A:HIS142 4.1 18.3 1.0
CG A:HIS142 4.2 17.3 1.0
CG A:HIS146 4.2 18.1 1.0
NE2 A:HIS231 4.3 27.8 1.0
CA A:VAL1001 4.4 25.6 1.0
CB A:SER169 4.5 15.7 1.0
CG A:GLU166 4.5 18.4 0.4
OE1 A:GLU143 4.5 25.9 1.0
O A:VAL1001 4.6 26.1 1.0
O A:HOH681 4.7 28.3 1.0
N A:VAL1001 4.7 27.6 1.0
OG A:SER169 4.7 20.5 1.0
CD2 A:HIS231 4.7 24.8 1.0
C A:VAL1001 4.7 25.9 1.0
CA A:GLU166 4.7 18.4 0.6
CA A:GLU166 4.8 18.5 0.4
O A:HOH720 4.8 44.1 1.0
CB A:GLU166 4.9 18.5 0.6
CZ A:TYR157 4.9 22.9 0.5
OE2 A:GLU143 4.9 31.3 1.0
CB A:GLU166 4.9 18.4 0.4

Reference:

M.Dong, B.J.Bahnson. Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin To Be Published.
Page generated: Wed Dec 16 10:55:37 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy