Atomistry » Zinc » PDB 5qpj-5rl7 » 5r4r
Atomistry »
  Zinc »
    PDB 5qpj-5rl7 »
      5r4r »

Zinc in PDB 5r4r: Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with EN08775-42

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with EN08775-42, PDB code: 5r4r was solved by S.L.Kidd, N.Mateu, R.Talon, T.Krojer, A.Aimon, A.R.Bradley, M.Fairhead, L.Diaz-Saez, H.F.Sore, A.Madin, K.V.M.Huber, F.Von Delft, D.R.Spring, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 70.95 / 1.50
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 59.090, 59.090, 212.840, 90.00, 90.00, 120.00
R / Rfree (%) 21 / 24.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with EN08775-42 (pdb code 5r4r). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with EN08775-42, PDB code: 5r4r:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in 5r4r

Go back to Zinc Binding Sites List in 5r4r
Zinc binding site 1 out of 6 in the Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with EN08775-42


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with EN08775-42 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:0.2
occ:1.00
NE1 A:TRP149 2.4 38.0 1.0
O A:HOH537 3.1 49.8 1.0
ND1 A:HIS171 3.3 26.8 1.0
CG A:HIS171 3.4 20.5 1.0
CE2 A:TRP149 3.4 29.4 1.0
CD1 A:TRP149 3.4 27.7 1.0
CE A:MET76 3.5 28.1 1.0
CB A:HIS171 3.6 19.0 1.0
CZ2 A:TRP149 3.7 36.0 1.0
SD A:MET76 3.8 24.7 1.0
CE1 A:HIS171 3.9 27.4 1.0
CD2 A:HIS171 4.0 21.7 1.0
O A:HOH413 4.3 30.4 1.0
NE2 A:HIS171 4.4 25.2 1.0
CD2 A:TRP149 4.6 32.5 1.0
CG A:TRP149 4.6 23.4 1.0
CD1 A:ILE161 4.7 35.5 1.0
CA A:HIS171 4.8 19.8 1.0

Zinc binding site 2 out of 6 in 5r4r

Go back to Zinc Binding Sites List in 5r4r
Zinc binding site 2 out of 6 in the Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with EN08775-42


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with EN08775-42 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn302

b:0.9
occ:1.00
ND1 A:HIS89 2.6 26.2 1.0
CA A:HIS89 3.3 25.7 1.0
CB A:HIS89 3.4 25.4 1.0
CG A:HIS89 3.4 25.6 1.0
CE1 A:HIS89 3.7 24.3 1.0
N A:HIS89 4.2 24.9 1.0
C A:HIS89 4.3 26.4 1.0
O A:HOH490 4.4 37.8 1.0
CD2 A:HIS89 4.6 24.8 1.0
O A:HIS89 4.7 27.5 1.0
NE2 A:HIS89 4.7 24.2 1.0

Zinc binding site 3 out of 6 in 5r4r

Go back to Zinc Binding Sites List in 5r4r
Zinc binding site 3 out of 6 in the Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with EN08775-42


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with EN08775-42 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:27.7
occ:1.00
OE1 B:GLU88 1.8 28.7 0.3
NE2 B:HIS93 2.0 18.8 1.0
O B:HOH401 2.8 44.9 1.0
CD B:GLU88 2.8 32.3 0.3
CE1 B:HIS93 2.9 21.2 1.0
CD2 B:HIS93 3.1 22.2 1.0
CG B:GLU88 3.2 33.0 0.3
OE2 B:GLU88 4.0 32.3 0.3
CB B:GLU88 4.1 32.1 0.2
CG B:GLU88 4.1 34.3 0.2
ND1 B:HIS93 4.1 21.2 1.0
CG B:HIS93 4.2 20.0 1.0
CG B:PRO197 4.4 24.5 1.0
CB B:PRO197 4.6 24.2 1.0
CD B:PRO197 4.7 23.3 1.0
O B:GLU88 4.7 35.4 0.3
CB B:GLU88 4.7 33.2 0.3
O B:HOH459 4.8 42.3 1.0
ND1 B:HIS89 4.9 41.0 0.3

Zinc binding site 4 out of 6 in 5r4r

Go back to Zinc Binding Sites List in 5r4r
Zinc binding site 4 out of 6 in the Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with EN08775-42


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with EN08775-42 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn302

b:33.4
occ:1.00
NE2 B:HIS164 1.9 31.8 1.0
CE1 B:HIS164 2.8 30.8 1.0
CD2 B:HIS164 3.0 27.0 1.0
ND1 B:HIS164 4.0 29.7 1.0
CG B:HIS164 4.1 26.9 1.0

Zinc binding site 5 out of 6 in 5r4r

Go back to Zinc Binding Sites List in 5r4r
Zinc binding site 5 out of 6 in the Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with EN08775-42


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with EN08775-42 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn303

b:0.1
occ:1.00
ND1 B:HIS164 3.5 29.7 1.0
CE1 B:HIS164 3.6 30.8 1.0
CG B:HIS164 4.8 26.9 1.0
NE2 B:HIS164 4.8 31.8 1.0

Zinc binding site 6 out of 6 in 5r4r

Go back to Zinc Binding Sites List in 5r4r
Zinc binding site 6 out of 6 in the Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with EN08775-42


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with EN08775-42 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn304

b:0.2
occ:1.00
NE1 B:TRP149 2.3 33.2 1.0
CD1 B:TRP149 3.1 30.4 1.0
CE2 B:TRP149 3.4 28.1 1.0
ND1 B:HIS171 3.8 30.6 1.0
CZ2 B:TRP149 3.9 36.3 1.0
CG B:HIS171 4.0 25.4 1.0
CE B:MET76 4.0 30.9 1.0
CD1 B:ILE161 4.0 35.0 1.0
SD B:MET76 4.1 29.8 1.0
CB B:HIS171 4.2 24.0 1.0
CE1 B:HIS171 4.3 32.2 1.0
CG B:TRP149 4.3 26.9 1.0
CD2 B:TRP149 4.4 31.2 1.0
CD2 B:HIS171 4.5 26.2 1.0
CG1 B:ILE161 4.6 30.1 1.0
CG B:PRO168 4.6 30.0 1.0
NE2 B:HIS171 4.7 31.1 1.0

Reference:

S.L.Kidd, N.Mateu, R.Talon, T.Krojer, A.Aimon, A.R.Bradley, M.Fairhead, L.Diaz-Saez, H.F.Sore, A.Madin, K.V.M.Huber, F.Von Delft, D.R.Spring. Pandda Analysis Group Deposition To Be Published.
Page generated: Wed Dec 16 06:44:48 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy