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Zinc in PDB 5onx: Resting State Copper Nitrite Reductase Determined By Serial Femtosecond Rotation Crystallography

Enzymatic activity of Resting State Copper Nitrite Reductase Determined By Serial Femtosecond Rotation Crystallography

All present enzymatic activity of Resting State Copper Nitrite Reductase Determined By Serial Femtosecond Rotation Crystallography:
1.7.2.1;

Protein crystallography data

The structure of Resting State Copper Nitrite Reductase Determined By Serial Femtosecond Rotation Crystallography, PDB code: 5onx was solved by T.P.Halsted, K.Yamashita, K.Hirata, H.Ago, G.Ueno, T.Tosha, R.R.Eady, S.V.Antonyuk, M.Yamamoto, S.S.Hasnain, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.84 / 1.60
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 89.970, 89.970, 143.560, 90.00, 90.00, 120.00
R / Rfree (%) 18.5 / 22.6

Other elements in 5onx:

The structure of Resting State Copper Nitrite Reductase Determined By Serial Femtosecond Rotation Crystallography also contains other interesting chemical elements:

Copper (Cu) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Resting State Copper Nitrite Reductase Determined By Serial Femtosecond Rotation Crystallography (pdb code 5onx). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Resting State Copper Nitrite Reductase Determined By Serial Femtosecond Rotation Crystallography, PDB code: 5onx:

Zinc binding site 1 out of 1 in 5onx

Go back to Zinc Binding Sites List in 5onx
Zinc binding site 1 out of 1 in the Resting State Copper Nitrite Reductase Determined By Serial Femtosecond Rotation Crystallography


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Resting State Copper Nitrite Reductase Determined By Serial Femtosecond Rotation Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn503

b:31.0
occ:1.00
NE2 A:HIS165 2.0 27.4 1.0
OD2 A:ASP167 2.0 29.3 1.0
CG A:ASP167 2.7 31.7 1.0
OD1 A:ASP167 2.7 30.8 1.0
CE1 A:HIS165 2.8 24.5 1.0
CD2 A:HIS165 3.1 26.4 1.0
OG1 A:THR234 3.8 26.0 1.0
O A:HOH688 3.8 38.5 1.0
O A:HOH656 3.9 39.6 1.0
ND1 A:HIS165 4.0 26.2 1.0
CB A:ASP167 4.1 29.6 1.0
CG A:HIS165 4.1 26.6 1.0
CB A:THR234 4.3 27.8 1.0
N A:THR234 4.4 28.9 1.0
O A:GLY232 4.6 33.4 1.0
N A:ASP167 4.7 27.6 1.0
CA A:ASP167 4.9 31.9 1.0
CA A:THR234 5.0 28.2 1.0

Reference:

T.P.Halsted, K.Yamashita, K.Hirata, H.Ago, G.Ueno, T.Tosha, R.R.Eady, S.V.Antonyuk, M.Yamamoto, S.S.Hasnain. An Unprecedented Dioxygen Species Revealed By Serial Femtosecond Rotation Crystallography in Copper Nitrite Reductase. Iucrj V. 5 22 2018.
ISSN: ESSN 2052-2525
PubMed: 29354268
DOI: 10.1107/S2052252517016128
Page generated: Wed Dec 16 06:39:08 2020

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