Zinc in PDB 5ofn: Crystal Structure of the Heterotrimeric Prislx Primase From S. Solfataricus.

The structure of Crystal Structure of the Heterotrimeric Prislx Primase From S. Solfataricus., PDB code: 5ofn was solved by L.Pellegrini, S.Holzer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.17 / 3.01
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	205.052, 36.348, 110.941, 90.00, 96.91, 90.00
R / Rfree (%)	24.1 / 29.8

The binding sites of Zinc atom in the Crystal Structure of the Heterotrimeric Prislx Primase From S. Solfataricus. (pdb code 5ofn). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Heterotrimeric Prislx Primase From S. Solfataricus., PDB code: 5ofn:

Zinc binding site 1 out of 1 in the Crystal Structure of the Heterotrimeric Prislx Primase From S. Solfataricus.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Heterotrimeric Prislx Primase From S. Solfataricus. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1000 b:65.7 occ:1.00 OD2 A:ASP131 2.0 66.2 1.0 SG A:CYS128 2.3 57.5 1.0 SG A:CYS119 2.3 55.2 1.0 SG A:CYS116 2.3 59.2 1.0 CB A:CYS116 3.0 52.9 1.0 CG A:ASP131 3.1 65.1 1.0 CB A:CYS128 3.1 62.4 1.0 CB A:CYS119 3.3 60.3 1.0 N A:CYS119 3.7 55.7 1.0 CB A:ASP131 3.8 63.6 1.0 OD1 A:ASP131 4.0 66.9 1.0 CA A:CYS119 4.1 55.8 1.0 N A:ASP131 4.3 68.9 1.0 CA A:CYS116 4.5 49.3 1.0 CB A:VAL118 4.5 59.4 1.0 CA A:CYS128 4.6 64.5 1.0 CB A:ARG130 4.6 74.0 1.0 CA A:ASP131 4.7 67.1 1.0 C A:VAL118 4.8 56.5 1.0 N A:GLY120 4.9 55.2 1.0 C A:CYS116 4.9 55.6 1.0 N A:VAL118 4.9 58.7 1.0 C A:CYS119 5.0 54.7 1.0 CA A:VAL118 5.0 57.7 1.0

S.Holzer, J.Yan, M.L.Kilkenny, S.D.Bell, L.Pellegrini. Primer Synthesis By A Eukaryotic-Like Archaeal Primase Is Independent of Its Fe-S Cluster. Nat Commun V. 8 1718 2017.
ISSN: ESSN 2041-1723
PubMed: 29167441
DOI: 10.1038/S41467-017-01707-W