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Zinc in PDB 5o8n: Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation.

Enzymatic activity of Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation.

All present enzymatic activity of Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation.:
3.4.24.27;

Protein crystallography data

The structure of Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation., PDB code: 5o8n was solved by D.N.Axford, C.Burton, P.Docker, M.Prince, P.D.Topham, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.00 / 1.90
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 93.552, 93.552, 129.753, 90.00, 90.00, 120.00
R / Rfree (%) 20 / 25.9

Other elements in 5o8n:

The structure of Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation. also contains other interesting chemical elements:

Calcium (Ca) 4 atoms
Chlorine (Cl) 3 atoms
Sodium (Na) 5 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation. (pdb code 5o8n). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation., PDB code: 5o8n:

Zinc binding site 1 out of 1 in 5o8n

Go back to Zinc Binding Sites List in 5o8n
Zinc binding site 1 out of 1 in the Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn403

b:37.4
occ:1.00
 OE1 A:GLU166 1.9 39.1 1.0
NE2 A:HIS146 2.1 39.2 1.0
CE1 A:HIS142 2.1 34.5 1.0
CL A:CL404 2.3 54.3 1.0
CD A:GLU166 2.7 38.0 1.0
OE2 A:GLU166 2.8 43.7 1.0
NE2 A:HIS142 2.8 38.8 1.0
CE1 A:HIS146 2.8 40.4 1.0
CD2 A:HIS146 3.2 36.9 1.0
ND1 A:HIS142 3.3 42.2 1.0
OH A:TYR157 3.9 54.2 1.0
NE2 A:HIS231 4.0 45.8 1.0
ND1 A:HIS146 4.0 37.8 1.0
CD2 A:HIS142 4.1 30.7 1.0
CG A:GLU166 4.1 36.2 1.0
CG A:HIS146 4.2 37.2 1.0
CG A:HIS142 4.3 40.5 1.0
CB A:SER169 4.6 37.2 1.0
OE1 A:GLU143 4.6 41.9 1.0
O A:HOH602 4.6 30.0 1.0
CD2 A:HIS231 4.7 36.6 1.0
CL A:CL406 4.7 77.1 1.0
CE1 A:TYR157 4.8 56.2 1.0
CA A:GLU166 4.8 40.6 1.0
CZ A:TYR157 4.8 57.0 1.0
OG A:SER169 4.8 33.6 1.0
O A:HOH587 4.9 30.0 1.0
OE2 A:GLU143 4.9 41.5 1.0
CB A:GLU166 5.0 36.7 1.0

Reference:

C.G.Burton, D.Axford, A.M.J.Edwards, R.J.Gildea, R.H.Morris, M.I.Newton, A.M.Orville, M.Prince, P.D.Topham, P.T.Docker. An Acoustic on-Chip Goniometer For Room Temperature Macromolecular Crystallography. Lab Chip V. 17 4225 2017.
ISSN: ISSN 1473-0189
PubMed: 29124258
DOI: 10.1039/C7LC00812K
Page generated: Sun Oct 27 23:19:58 2024

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