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Zinc in PDB 5no4: Rsga-Gdpnp Bound to the 30S Ribosomal Subunit (Rsga Assembly Intermediate with US3)

Other elements in 5no4:

The structure of Rsga-Gdpnp Bound to the 30S Ribosomal Subunit (Rsga Assembly Intermediate with US3) also contains other interesting chemical elements:

Magnesium (Mg) 71 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Rsga-Gdpnp Bound to the 30S Ribosomal Subunit (Rsga Assembly Intermediate with US3) (pdb code 5no4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Rsga-Gdpnp Bound to the 30S Ribosomal Subunit (Rsga Assembly Intermediate with US3), PDB code: 5no4:

Zinc binding site 1 out of 1 in 5no4

Go back to Zinc Binding Sites List in 5no4
Zinc binding site 1 out of 1 in the Rsga-Gdpnp Bound to the 30S Ribosomal Subunit (Rsga Assembly Intermediate with US3)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Rsga-Gdpnp Bound to the 30S Ribosomal Subunit (Rsga Assembly Intermediate with US3) within 5.0Å range:
probe atom residue distance (Å) B Occ
Z:Zn401

b:0.4
occ:1.00
ND1 Z:HIS304 2.3 0.4 1.0
SG Z:CYS310 2.5 0.4 1.0
SG Z:CYS302 2.5 0.1 1.0
SG Z:CYS297 2.6 0.6 1.0
CE1 Z:HIS304 2.6 0.4 1.0
CB Z:CYS310 3.0 0.4 1.0
CA Z:CYS310 3.2 0.4 1.0
CB Z:CYS297 3.2 0.6 1.0
CG Z:HIS304 3.5 0.4 1.0
CB Z:CYS302 3.6 0.1 1.0
NE2 Z:HIS304 3.8 0.4 1.0
C Z:CYS310 4.0 0.4 1.0
N Z:ALA311 4.1 0.8 1.0
CA Z:HIS304 4.2 0.4 1.0
CD2 Z:HIS304 4.2 0.4 1.0
CB Z:HIS304 4.2 0.4 1.0
N Z:CYS310 4.3 0.4 1.0
CA Z:CYS297 4.6 0.6 1.0
O Z:GLY309 4.7 0.9 1.0
N Z:HIS304 4.7 0.4 1.0
N Z:ILE312 4.8 0.8 1.0
C Z:GLY309 4.9 0.9 1.0
CA Z:CYS302 5.0 0.1 1.0

Reference:

J.P.Lopez-Alonso, T.Kaminishi, T.Kikuchi, Y.Hirata, I.Iturrioz, N.Dhimole, A.Schedlbauer, Y.Hase, S.Goto, D.Kurita, A.Muto, S.Zhou, C.Naoe, D.J.Mills, D.Gil-Carton, C.Takemoto, H.Himeno, P.Fucini, S.R.Connell. Rsga Couples the Maturation State of the 30S Ribosomal Decoding Center to Activation of Its Gtpase Pocket. Nucleic Acids Res. V. 45 6945 2017.
ISSN: ESSN 1362-4962
PubMed: 28482099
DOI: 10.1093/NAR/GKX324
Page generated: Wed Dec 16 06:36:30 2020

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