Zinc in PDB 5no3: Rsga-Gdpnp Bound to the 30S Ribosomal Subunit (Rsga Assembly Intermediate Without US3)

The structure of Rsga-Gdpnp Bound to the 30S Ribosomal Subunit (Rsga Assembly Intermediate Without US3) also contains other interesting chemical elements:

Magnesium

(Mg)

71 atoms

The binding sites of Zinc atom in the Rsga-Gdpnp Bound to the 30S Ribosomal Subunit (Rsga Assembly Intermediate Without US3) (pdb code 5no3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Rsga-Gdpnp Bound to the 30S Ribosomal Subunit (Rsga Assembly Intermediate Without US3), PDB code: 5no3:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Rsga-Gdpnp Bound to the 30S Ribosomal Subunit (Rsga Assembly Intermediate Without US3)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Rsga-Gdpnp Bound to the 30S Ribosomal Subunit (Rsga Assembly Intermediate Without US3) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn301 b:0.4 occ:1.00 NE2 B:HIS18 2.7 0.9 1.0 OD1 B:ASN190 2.8 0.7 1.0 ND2 B:ASN190 3.3 0.7 1.0 CD2 B:HIS18 3.3 0.9 1.0 OD2 B:ASP204 3.4 0.5 1.0 CG B:ASN190 3.4 0.7 1.0 OD1 B:ASP165 3.4 0.7 1.0 CE1 B:HIS18 3.7 0.9 1.0 OD1 B:ASP204 3.9 0.5 1.0 OD2 B:ASP188 4.0 0.9 1.0 CB B:ASP188 4.0 0.9 1.0 CG B:ASP204 4.1 0.5 1.0 OD2 B:ASP167 4.2 0.7 1.0 OG B:SER191 4.4 0.3 1.0 CG B:ASP165 4.4 0.7 1.0 CG B:ASP188 4.4 0.9 1.0 CG B:HIS18 4.5 0.9 1.0 ND1 B:HIS18 4.7 0.9 1.0 OD2 B:ASP165 4.8 0.7 1.0 CB B:ASP167 4.9 0.7 1.0 CB B:ASN190 4.9 0.7 1.0 CG B:ASP167 5.0 0.7 1.0

Zinc binding site 2 out of 2 in the Rsga-Gdpnp Bound to the 30S Ribosomal Subunit (Rsga Assembly Intermediate Without US3)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Rsga-Gdpnp Bound to the 30S Ribosomal Subunit (Rsga Assembly Intermediate Without US3) within 5.0Å range: probe atom residue distance (Å) B Occ Z:Zn401 b:0.3 occ:1.00 ND1 Z:HIS304 2.2 0.7 1.0 SG Z:CYS302 2.5 0.3 1.0 SG Z:CYS297 2.5 0.6 1.0 SG Z:CYS310 2.5 0.3 1.0 CE1 Z:HIS304 2.5 0.7 1.0 CB Z:CYS310 3.1 0.3 1.0 CB Z:CYS297 3.1 0.6 1.0 CB Z:CYS302 3.4 0.3 1.0 CA Z:CYS310 3.4 0.3 1.0 CG Z:HIS304 3.5 0.7 1.0 NE2 Z:HIS304 3.7 0.7 1.0 CD2 Z:HIS304 4.2 0.7 1.0 C Z:CYS310 4.2 0.3 1.0 N Z:ALA311 4.2 1.0 1.0 CA Z:HIS304 4.2 0.7 1.0 CB Z:HIS304 4.2 0.7 1.0 N Z:CYS310 4.5 0.3 1.0 CA Z:CYS297 4.6 0.6 1.0 N Z:HIS304 4.7 0.7 1.0 CA Z:CYS302 4.8 0.3 1.0 N Z:ILE312 4.8 0.1 1.0 O Z:GLY309 5.0 0.5 1.0

J.P.Lopez-Alonso, T.Kaminishi, T.Kikuchi, Y.Hirata, I.Iturrioz, N.Dhimole, A.Schedlbauer, Y.Hase, S.Goto, D.Kurita, A.Muto, S.Zhou, C.Naoe, D.J.Mills, D.Gil-Carton, C.Takemoto, H.Himeno, P.Fucini, S.R.Connell. Rsga Couples the Maturation State of the 30S Ribosomal Decoding Center to Activation of Its Gtpase Pocket. Nucleic Acids Res. V. 45 6945 2017.
ISSN: ESSN 1362-4962
PubMed: 28482099
DOI: 10.1093/NAR/GKX324