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Zinc in PDB 5nmy: uc(Nmr) Solution Structure of Lysostaphin

Enzymatic activity of uc(Nmr) Solution Structure of Lysostaphin

All present enzymatic activity of uc(Nmr) Solution Structure of Lysostaphin:
3.4.24.75;

Zinc Binding Sites:

The binding sites of Zinc atom in the uc(Nmr) Solution Structure of Lysostaphin (pdb code 5nmy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the uc(Nmr) Solution Structure of Lysostaphin, PDB code: 5nmy:

Zinc binding site 1 out of 1 in 5nmy

Go back to Zinc Binding Sites List in 5nmy
Zinc binding site 1 out of 1 in the uc(Nmr) Solution Structure of Lysostaphin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of uc(Nmr) Solution Structure of Lysostaphin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:0.0
occ:1.00
OD1 A:ASP283 1.9 0.0 1.0
NE2 A:HIS279 2.1 0.0 1.0
ND1 A:HIS362 2.2 0.0 1.0
CG A:ASP283 2.9 0.0 1.0
CE1 A:HIS362 3.0 0.0 1.0
OD2 A:ASP283 3.1 0.0 1.0
CD2 A:HIS279 3.1 0.0 1.0
HE1 A:HIS362 3.1 0.0 1.0
CE1 A:HIS279 3.2 0.0 1.0
CG A:HIS362 3.3 0.0 1.0
HD2 A:HIS279 3.4 0.0 1.0
HE1 A:HIS279 3.4 0.0 1.0
HB2 A:HIS362 3.5 0.0 1.0
CB A:HIS362 4.0 0.0 1.0
NE2 A:HIS362 4.1 0.0 1.0
CB A:ASP283 4.3 0.0 1.0
ND1 A:HIS279 4.3 0.0 1.0
CG A:HIS279 4.3 0.0 1.0
CD2 A:HIS362 4.3 0.0 1.0
HA A:ASP283 4.5 0.0 1.0
HA A:HIS362 4.5 0.0 1.0
N A:ASP283 4.7 0.0 1.0
CA A:ASP283 4.8 0.0 1.0
HB3 A:HIS362 4.8 0.0 1.0
HB3 A:ASP283 4.8 0.0 1.0
HB2 A:TYR265 4.9 0.0 1.0
HB2 A:ASP283 4.9 0.0 1.0
CA A:HIS362 4.9 0.0 1.0
C A:VAL282 4.9 0.0 1.0
H A:ASP283 4.9 0.0 1.0
HE2 A:HIS362 5.0 0.0 1.0

Reference:

H.Tossavainen, V.Raulinaitis, L.Kauppinen, U.Pentikainen, H.Maaheimo, P.Permi. Structural and Functional Insights Into Lysostaphin-Substrate Interaction. Front Mol Biosci V. 5 60 2018.
ISSN: ESSN 2296-889X
PubMed: 30018958
DOI: 10.3389/FMOLB.2018.00060
Page generated: Wed Dec 16 06:36:23 2020

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