Zinc in PDB 5ms0: Pseudo-Atomic Model of the Rna Polymerase Lambda-Based Antitermination Complex Solved By Cryo-Em

All present enzymatic activity of Pseudo-Atomic Model of the Rna Polymerase Lambda-Based Antitermination Complex Solved By Cryo-Em:
2.7.7.6;

The structure of Pseudo-Atomic Model of the Rna Polymerase Lambda-Based Antitermination Complex Solved By Cryo-Em also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Zinc atom in the Pseudo-Atomic Model of the Rna Polymerase Lambda-Based Antitermination Complex Solved By Cryo-Em (pdb code 5ms0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Pseudo-Atomic Model of the Rna Polymerase Lambda-Based Antitermination Complex Solved By Cryo-Em, PDB code: 5ms0:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Pseudo-Atomic Model of the Rna Polymerase Lambda-Based Antitermination Complex Solved By Cryo-Em


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Pseudo-Atomic Model of the Rna Polymerase Lambda-Based Antitermination Complex Solved By Cryo-Em within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn1502 b:81.6 occ:1.00 CB D:CYS88 2.8 0.0 1.0 CB D:CYS72 3.3 0.0 1.0 O D:CYS88 3.4 0.0 1.0 N D:CYS72 3.7 0.0 1.0 CA D:CYS88 3.9 0.0 1.0 C D:CYS88 4.1 0.0 1.0 CA D:CYS72 4.1 0.0 1.0 N D:CYS88 4.4 0.0 1.0 CB D:CYS70 4.6 0.0 1.0 N D:LEU71 4.6 0.0 1.0 C D:LEU71 4.8 0.0 1.0 CB D:LEU71 4.9 0.0 1.0 CB D:CYS85 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Pseudo-Atomic Model of the Rna Polymerase Lambda-Based Antitermination Complex Solved By Cryo-Em


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Pseudo-Atomic Model of the Rna Polymerase Lambda-Based Antitermination Complex Solved By Cryo-Em within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn1503 b:59.8 occ:1.00 CB D:CYS888 3.2 0.0 1.0 CB D:CYS898 3.6 0.0 1.0 CA D:CYS888 3.8 0.0 1.0 CB D:CYS895 4.1 0.0 1.0 O D:SER887 4.3 0.0 1.0 CB D:THR816 4.5 0.0 1.0 N D:ASP889 4.6 0.0 1.0 N D:CYS898 4.7 0.0 1.0 CA D:CYS898 4.8 0.0 1.0 C D:CYS888 4.8 0.0 1.0 N D:CYS888 4.9 0.0 1.0 N D:CYS895 4.9 0.0 1.0 N D:THR816 4.9 0.0 1.0 O D:SER884 5.0 0.0 1.0

N.Said, F.Krupp, E.Anedchenko, K.F.Santos, O.Dybkov, Y.H.Huang, C.T.Lee, B.Loll, E.Behrmann, J.Burger, T.Mielke, J.Loerke, H.Urlaub, C.M.T.Spahn, G.Weber, M.C.Wahl. Structural Basis For Lambda N-Dependent Processive Transcription Antitermination. Nat Microbiol V. 2 17062 2017.
ISSN: ESSN 2058-5276
PubMed: 28452979
DOI: 10.1038/NMICROBIOL.2017.62