Atomistry » Zinc » PDB 5m8p-5mmb » 5mey
Atomistry »
  Zinc »
    PDB 5m8p-5mmb »
      5mey »

Zinc in PDB 5mey: Crystal Structure of SMAD4-MH1 Bound to the Ggcgc Site.

Protein crystallography data

The structure of Crystal Structure of SMAD4-MH1 Bound to the Ggcgc Site., PDB code: 5mey was solved by Z.Kaczmarska, R.Freier, J.A.Marquez, M.J.Macias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.70 / 2.05
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 64.170, 79.000, 90.100, 90.00, 90.00, 90.00
R / Rfree (%) 22.2 / 23.8

Other elements in 5mey:

The structure of Crystal Structure of SMAD4-MH1 Bound to the Ggcgc Site. also contains other interesting chemical elements:

Calcium (Ca) 5 atoms
Chlorine (Cl) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of SMAD4-MH1 Bound to the Ggcgc Site. (pdb code 5mey). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of SMAD4-MH1 Bound to the Ggcgc Site., PDB code: 5mey:

Zinc binding site 1 out of 1 in 5mey

Go back to Zinc Binding Sites List in 5mey
Zinc binding site 1 out of 1 in the Crystal Structure of SMAD4-MH1 Bound to the Ggcgc Site.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of SMAD4-MH1 Bound to the Ggcgc Site. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:45.8
occ:1.00
SG A:CYS115 2.1 51.1 1.0
ND1 A:HIS132 2.1 50.0 1.0
SG A:CYS127 2.5 39.3 1.0
SG A:CYS71 2.5 53.2 1.0
CB A:CYS127 3.0 35.3 1.0
CE1 A:HIS132 3.1 49.3 1.0
CG A:HIS132 3.1 48.0 1.0
CB A:CYS115 3.2 48.0 1.0
CB A:HIS132 3.4 44.0 1.0
CB A:CYS71 3.5 48.8 1.0
CA A:CYS115 3.7 48.6 1.0
CA A:CYS71 3.8 47.9 1.0
NE2 A:HIS132 4.2 49.6 1.0
CD2 A:HIS132 4.2 49.7 1.0
C A:CYS115 4.4 50.0 1.0
N A:GLN116 4.4 46.2 1.0
N A:CYS71 4.5 49.3 1.0
CA A:CYS127 4.5 34.4 1.0
N A:TYR117 4.6 47.4 1.0
N A:ALA118 4.8 44.1 1.0
CA A:HIS132 4.9 42.4 1.0
CB A:ASN129 5.0 39.2 1.0
C A:CYS71 5.0 47.1 1.0
N A:VAL72 5.0 41.0 1.0
N A:CYS115 5.0 50.8 1.0

Reference:

P.Martin-Malpartida, M.Batet, Z.Kaczmarska, R.Freier, T.Gomes, E.Aragon, Y.Zou, Q.Wang, Q.Xi, L.Ruiz, A.Vea, J.A.Marquez, J.Massague, M.J.Macias. Structural Basis For Genome Wide Recognition of 5-Bp Gc Motifs By Smad Transcription Factors. Nat Commun V. 8 2070 2017.
ISSN: ESSN 2041-1723
PubMed: 29234012
DOI: 10.1038/S41467-017-02054-6
Page generated: Wed Dec 16 06:32:47 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy