Zinc in PDB 5mam: Human Insulin in Complex with Serotonin

The structure of Human Insulin in Complex with Serotonin, PDB code: 5mam was solved by A.M.Brzozowski, J.P.Turkenburg, J.Jiracek, L.Zakova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	51.18 / 2.20
Space group	H 3 1
Cell size a, b, c (Å), α, β, γ (°)	158.960, 158.960, 76.530, 90.00, 90.00, 120.00
R / Rfree (%)	20.2 / 28

The structure of Human Insulin in Complex with Serotonin also contains other interesting chemical elements:

Chlorine

(Cl)

8 atoms

The binding sites of Zinc atom in the Human Insulin in Complex with Serotonin (pdb code 5mam). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the Human Insulin in Complex with Serotonin, PDB code: 5mam:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Zinc binding site 1 out of 8 in the Human Insulin in Complex with Serotonin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Human Insulin in Complex with Serotonin within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn101 b:45.8 occ:0.33 NE2 B:HIS10 2.1 39.9 1.0 CL B:CL102 2.5 0.1 0.3 CE1 B:HIS10 3.0 39.6 1.0 CD2 B:HIS10 3.1 39.5 1.0 ND1 B:HIS10 4.2 41.1 1.0 CG B:HIS10 4.2 40.0 1.0

Zinc binding site 2 out of 8 in the Human Insulin in Complex with Serotonin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Human Insulin in Complex with Serotonin within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn101 b:33.0 occ:0.33 NE2 D:HIS10 2.1 31.4 1.0 CL D:CL102 2.5 36.4 0.3 CE1 D:HIS10 3.0 32.7 1.0 CD2 D:HIS10 3.1 35.6 1.0 ND1 D:HIS10 4.2 32.1 1.0 CG D:HIS10 4.2 32.8 1.0 O D:LEU6 4.8 39.2 1.0

Zinc binding site 3 out of 8 in the Human Insulin in Complex with Serotonin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Human Insulin in Complex with Serotonin within 5.0Å range: probe atom residue distance (Å) B Occ F:Zn101 b:36.8 occ:1.00 NE2 F:HIS10 2.0 32.0 1.0 NE2 L:HIS10 2.0 32.2 1.0 NE2 N:HIS10 2.0 37.9 1.0 CL F:CL102 2.5 64.7 1.0 CE1 F:HIS10 2.9 33.3 1.0 CE1 L:HIS10 3.0 33.1 1.0 CE1 N:HIS10 3.0 35.1 1.0 CD2 N:HIS10 3.0 33.5 1.0 CD2 L:HIS10 3.1 32.1 1.0 CD2 F:HIS10 3.1 34.5 1.0 ND1 F:HIS10 4.1 34.4 1.0 ND1 L:HIS10 4.1 33.6 1.0 ND1 N:HIS10 4.1 37.5 1.0 CG F:HIS10 4.2 31.3 1.0 CG N:HIS10 4.2 32.2 1.0 CG L:HIS10 4.2 31.7 1.0

Zinc binding site 4 out of 8 in the Human Insulin in Complex with Serotonin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Human Insulin in Complex with Serotonin within 5.0Å range: probe atom residue distance (Å) B Occ H:Zn101 b:21.4 occ:1.00 NE2 H:HIS10 2.0 21.0 1.0 NE2 P:HIS10 2.0 24.1 1.0 NE2 J:HIS10 2.1 25.1 1.0 CL P:CL101 2.4 24.3 1.0 CE1 H:HIS10 2.9 21.3 1.0 CE1 P:HIS10 3.0 24.2 1.0 CD2 H:HIS10 3.0 21.3 1.0 CD2 P:HIS10 3.1 22.6 1.0 CD2 J:HIS10 3.1 24.9 1.0 CE1 J:HIS10 3.1 25.2 1.0 ND1 H:HIS10 4.1 22.8 1.0 ND1 P:HIS10 4.1 23.2 1.0 CG H:HIS10 4.1 22.4 1.0 CG P:HIS10 4.2 22.2 1.0 ND1 J:HIS10 4.2 22.1 1.0 CG J:HIS10 4.2 23.2 1.0 O P:LEU6 4.6 26.2 1.0 O H:LEU6 4.7 23.4 1.0 O J:LEU6 4.8 25.5 1.0 CB J:LEU6 4.9 27.5 1.0 CB P:LEU6 4.9 33.5 1.0 CB H:LEU6 4.9 25.9 1.0

Zinc binding site 5 out of 8 in the Human Insulin in Complex with Serotonin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Human Insulin in Complex with Serotonin within 5.0Å range: probe atom residue distance (Å) B Occ R:Zn101 b:24.1 occ:1.00 NE2 1:HIS10 2.0 23.1 1.0 NE2 R:HIS10 2.0 27.1 1.0 NE2 X:HIS10 2.0 24.9 1.0 CL X:CL101 2.4 27.4 1.0 CE1 1:HIS10 2.9 23.0 1.0 CE1 R:HIS10 2.9 27.9 1.0 CE1 X:HIS10 2.9 28.0 1.0 CD2 1:HIS10 3.0 23.5 1.0 CD2 X:HIS10 3.0 24.1 1.0 CD2 R:HIS10 3.0 25.3 1.0 ND1 1:HIS10 4.0 22.0 1.0 ND1 R:HIS10 4.0 29.6 1.0 ND1 X:HIS10 4.1 26.1 1.0 CG 1:HIS10 4.1 22.6 1.0 CG R:HIS10 4.1 24.8 1.0 CG X:HIS10 4.1 24.2 1.0 O X:LEU6 4.6 29.3 1.0 O 1:LEU6 4.8 32.9 1.0 O R:LEU6 4.8 25.9 1.0 CB 1:LEU6 4.9 28.4 1.0 CB X:LEU6 4.9 27.8 1.0

Zinc binding site 6 out of 8 in the Human Insulin in Complex with Serotonin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Human Insulin in Complex with Serotonin within 5.0Å range: probe atom residue distance (Å) B Occ T:Zn101 b:36.8 occ:1.00 NE2 V:HIS10 2.0 32.6 1.0 NE2 T:HIS10 2.0 32.2 1.0 NE2 Z:HIS10 2.1 34.0 1.0 CL T:CL102 2.5 60.4 1.0 CE1 T:HIS10 2.9 35.1 1.0 CE1 V:HIS10 2.9 34.7 1.0 CE1 Z:HIS10 3.0 36.6 1.0 CD2 V:HIS10 3.0 31.1 1.0 CD2 T:HIS10 3.1 31.2 1.0 CD2 Z:HIS10 3.1 32.7 1.0 ND1 V:HIS10 4.0 35.7 1.0 ND1 T:HIS10 4.0 33.9 1.0 CG V:HIS10 4.1 31.3 1.0 ND1 Z:HIS10 4.2 37.1 1.0 CG T:HIS10 4.2 30.6 1.0 CG Z:HIS10 4.2 33.1 1.0

Zinc binding site 7 out of 8 in the Human Insulin in Complex with Serotonin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Human Insulin in Complex with Serotonin within 5.0Å range: probe atom residue distance (Å) B Occ 3:Zn101 b:32.4 occ:0.33 NE2 3:HIS10 2.1 28.7 1.0 CL 3:CL102 2.5 72.7 1.0 CE1 3:HIS10 3.0 28.9 1.0 CD2 3:HIS10 3.1 27.4 1.0 ND1 3:HIS10 4.1 30.6 1.0 CG 3:HIS10 4.2 28.6 1.0 O 3:HOH204 4.9 55.3 1.0

Zinc binding site 8 out of 8 in the Human Insulin in Complex with Serotonin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Human Insulin in Complex with Serotonin within 5.0Å range: probe atom residue distance (Å) B Occ 5:Zn101 b:26.1 occ:0.33 NE2 5:HIS10 2.0 31.9 1.0 CL 5:CL102 2.5 29.3 0.3 CE1 5:HIS10 2.9 33.0 1.0 CD2 5:HIS10 3.0 32.2 1.0 ND1 5:HIS10 4.0 32.6 1.0 CG 5:HIS10 4.1 29.3 1.0 CB 5:LEU6 4.8 30.7 1.0 O 5:LEU6 4.8 31.2 1.0

V.Palivec, C.M.Viola, M.Kozak, T.R.Ganderton, K.Krizkova, J.P.Turkenburg, P.Haluskova, L.Zakova, J.Jiracek, P.Jungwirth, A.M.Brzozowski. Computational and Structural Evidence For Neurotransmitter-Mediated Modulation of the Oligomeric States of Human Insulin in Storage Granules. J. Biol. Chem. V. 292 8342 2017.
ISSN: ESSN 1083-351X
PubMed: 28348075
DOI: 10.1074/JBC.M117.775924