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Zinc in PDB 5lms: Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-2C)

Other elements in 5lms:

The structure of Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-2C) also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-2C) (pdb code 5lms). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-2C), PDB code: 5lms:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 5lms

Go back to Zinc Binding Sites List in 5lms
Zinc binding site 1 out of 2 in the Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-2C)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-2C) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn300

b:50.0
occ:1.00
SG D:CYS26 1.7 50.0 1.0
SG D:CYS9 1.9 50.0 1.0
SG D:CYS31 2.2 50.0 1.0
CB D:CYS31 3.1 50.0 1.0
CG D:LYS22 3.3 50.0 1.0
CA D:CYS31 3.4 50.0 1.0
O D:LEU19 3.4 50.0 1.0
CB D:CYS26 3.5 50.0 1.0
CB D:CYS9 3.6 50.0 1.0
O D:CYS31 3.7 50.0 1.0
SG D:CYS12 3.8 50.0 1.0
N D:LYS22 3.8 50.0 1.0
CB D:LYS22 3.9 50.0 1.0
C D:CYS31 4.0 50.0 1.0
C D:LEU21 4.0 50.0 1.0
N D:LEU21 4.1 50.0 1.0
CA D:CYS26 4.1 50.0 1.0
CA D:CYS9 4.3 50.0 1.0
O D:LEU21 4.3 50.0 1.0
CA D:LYS22 4.5 50.0 1.0
CD D:LYS22 4.5 50.0 1.0
CA D:LEU21 4.5 50.0 1.0
C D:LEU19 4.7 50.0 1.0
N D:CYS31 4.7 50.0 1.0
N D:CYS26 4.8 50.0 1.0
CB D:CYS12 4.9 50.0 1.0
N D:CYS9 4.9 50.0 1.0
CE D:LYS22 5.0 50.0 1.0

Zinc binding site 2 out of 2 in 5lms

Go back to Zinc Binding Sites List in 5lms
Zinc binding site 2 out of 2 in the Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-2C)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Bacterial 30S-IF1-IF3-Mrna-Trna Translation Pre- Initiation Complex(State-2C) within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Zn101

b:50.0
occ:0.92
SG N:CYS43 2.2 50.0 1.0
SG N:CYS27 2.5 50.0 1.0
SG N:CYS24 2.7 50.0 1.0
N N:CYS27 2.9 50.0 1.0
CB N:ARG26 3.2 50.0 1.0
CB N:CYS43 3.2 50.0 1.0
CB N:CYS27 3.3 50.0 1.0
C N:ARG26 3.7 50.0 1.0
CA N:CYS27 3.7 50.0 1.0
CA N:ARG26 3.7 50.0 1.0
N N:ARG26 3.7 50.0 1.0
SG N:CYS40 3.9 50.0 1.0
CB N:CYS24 4.0 50.0 1.0
CD N:ARG26 4.2 50.0 1.0
CG N:ARG26 4.3 50.0 1.0
N N:GLY28 4.5 50.0 1.0
CD2 N:LEU39 4.5 50.0 1.0
CB N:CYS40 4.6 50.0 1.0
CA N:CYS43 4.7 50.0 1.0
C N:CYS27 4.7 50.0 1.0
O N:ARG26 4.7 50.0 1.0
N N:CYS40 4.8 50.0 1.0
C N:VAL25 4.8 50.0 1.0
N N:VAL25 4.9 50.0 1.0

Reference:

T.Hussain, J.L.Llacer, B.T.Wimberly, J.S.Kieft, V.Ramakrishnan. Large-Scale Movements of IF3 and Trna During Bacterial Translation Initiation. Cell V. 167 133 2016.
ISSN: ISSN 1097-4172
PubMed: 27662086
DOI: 10.1016/J.CELL.2016.08.074
Page generated: Wed Dec 16 06:30:11 2020

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