Zinc in PDB 5lmp: Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1C)

The structure of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1C) also contains other interesting chemical elements:

Magnesium

(Mg)

108 atoms

The binding sites of Zinc atom in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1C) (pdb code 5lmp). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1C), PDB code: 5lmp:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1C)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1C) within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn300 b:50.0 occ:1.00 SG D:CYS26 1.5 50.0 1.0 SG D:CYS9 1.8 50.0 1.0 SG D:CYS31 2.3 50.0 1.0 CA D:CYS31 3.2 50.0 1.0 CB D:CYS31 3.2 50.0 1.0 CB D:CYS26 3.3 50.0 1.0 CB D:CYS9 3.3 50.0 1.0 O D:CYS31 3.4 50.0 1.0 CG D:LYS22 3.5 50.0 1.0 C D:CYS31 3.7 50.0 1.0 N D:LEU21 4.0 50.0 1.0 CA D:CYS9 4.0 50.0 1.0 CG1 D:VAL8 4.1 50.0 1.0 N D:LYS22 4.1 50.0 1.0 CA D:CYS26 4.1 50.0 1.0 C D:LEU21 4.1 50.0 1.0 SG D:CYS12 4.2 50.0 1.0 CB D:LYS22 4.2 50.0 1.0 CA D:LEU21 4.3 50.0 1.0 CD D:LYS22 4.3 50.0 1.0 CB D:LEU21 4.3 50.0 1.0 N D:CYS9 4.5 50.0 1.0 N D:CYS31 4.6 50.0 1.0 O D:LEU21 4.6 50.0 1.0 N D:CYS26 4.7 50.0 1.0 CA D:LYS22 4.8 50.0 1.0 O D:LYS30 4.8 50.0 1.0 N D:ALA32 4.8 50.0 1.0 CB D:CYS12 5.0 50.0 1.0

Zinc binding site 2 out of 2 in the Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1C)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Bacterial 30S-IF1-IF3-Mrna Translation Pre-Initiation Complex (State-1C) within 5.0Å range: probe atom residue distance (Å) B Occ N:Zn101 b:50.0 occ:0.92 SG N:CYS24 1.6 50.0 1.0 N N:CYS27 2.7 50.0 1.0 N N:ARG26 2.8 50.0 1.0 CB N:CYS24 3.1 50.0 1.0 CB N:ARG26 3.2 50.0 1.0 CA N:ARG26 3.2 50.0 1.0 SG N:CYS27 3.3 50.0 1.0 N N:VAL25 3.3 50.0 1.0 C N:ARG26 3.4 50.0 1.0 C N:CYS24 3.5 50.0 1.0 C N:VAL25 3.6 50.0 1.0 CD2 N:LEU39 3.7 50.0 1.0 CA N:CYS27 3.7 50.0 1.0 CA N:CYS24 3.8 50.0 1.0 N N:GLY28 3.8 50.0 1.0 CB N:CYS27 3.9 50.0 1.0 CA N:VAL25 4.0 50.0 1.0 SG N:CYS43 4.0 50.0 1.0 O N:CYS24 4.0 50.0 1.0 CB N:CYS43 4.1 50.0 1.0 C N:CYS27 4.3 50.0 1.0 O N:VAL25 4.5 50.0 1.0 N N:CYS40 4.5 50.0 1.0 CB N:LEU39 4.6 50.0 1.0 O N:ARG26 4.6 50.0 1.0 CA N:LEU39 4.6 50.0 1.0 CG N:ARG26 4.7 50.0 1.0 CG N:LEU39 4.7 50.0 1.0 SG N:CYS40 4.8 50.0 1.0 CA N:GLY28 4.9 50.0 1.0

T.Hussain, J.L.Llacer, B.T.Wimberly, J.S.Kieft, V.Ramakrishnan. Large-Scale Movements of IF3 and Trna During Bacterial Translation Initiation. Cell V. 167 133 2016.
ISSN: ISSN 1097-4172
PubMed: 27662086
DOI: 10.1016/J.CELL.2016.08.074