Zinc in PDB 5kqb: Identification and Structural Characterization of Lytu

All present enzymatic activity of Identification and Structural Characterization of Lytu:
3.4.24.75;

The binding sites of Zinc atom in the Identification and Structural Characterization of Lytu (pdb code 5kqb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Identification and Structural Characterization of Lytu, PDB code: 5kqb:

Zinc binding site 1 out of 1 in the Identification and Structural Characterization of Lytu


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Identification and Structural Characterization of Lytu within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 OD1 A:ASP80 1.8 0.0 1.0 OD2 A:ASP80 1.8 0.0 1.0 NE2 A:HIS76 2.0 0.0 1.0 ND1 A:HIS159 2.1 0.0 1.0 CG A:ASP80 2.2 0.0 1.0 CE1 A:HIS76 3.0 0.0 1.0 CD2 A:HIS76 3.0 0.0 1.0 CE1 A:HIS159 3.1 0.0 1.0 HB2 A:HIS159 3.1 0.0 1.0 CG A:HIS159 3.2 0.0 1.0 HE1 A:HIS76 3.2 0.0 1.0 HD2 A:HIS76 3.3 0.0 1.0 HE1 A:HIS159 3.3 0.0 1.0 CB A:HIS159 3.7 0.0 1.0 CB A:ASP80 3.8 0.0 1.0 ND1 A:HIS76 4.1 0.0 1.0 HA A:HIS159 4.1 0.0 1.0 CG A:HIS76 4.1 0.0 1.0 HB2 A:ASP80 4.2 0.0 1.0 HH A:TYR67 4.2 0.0 1.0 NE2 A:HIS159 4.3 0.0 1.0 HB3 A:ASP80 4.3 0.0 1.0 HA A:ASP80 4.3 0.0 1.0 CD2 A:HIS159 4.3 0.0 1.0 OH A:TYR67 4.4 0.0 1.0 HB3 A:HIS159 4.5 0.0 1.0 CA A:ASP80 4.5 0.0 1.0 CA A:HIS159 4.6 0.0 1.0 HE1 A:HIS157 4.6 0.0 1.0 N A:ASP80 4.7 0.0 1.0 HB2 A:GLU62 4.7 0.0 1.0 O A:ILE79 4.8 0.0 1.0 CE1 A:HIS157 4.9 0.0 1.0 C A:ILE79 4.9 0.0 1.0

V.Raulinaitis, H.Tossavainen, O.Aitio, J.T.Juuti, K.Hiramatsu, V.Kontinen, P.Permi. Identification and Structural Characterization of Lytu, A Unique Peptidoglycan Endopeptidase From the Lysostaphin Family. Sci Rep V. 7 6020 2017.
ISSN: ESSN 2045-2322
PubMed: 28729697
DOI: 10.1038/S41598-017-06135-W