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Zinc in PDB 5jvs: The Neck-Linker + Dal and Alpha 7 Helix of Drosophila Melanogaster Kinesin-1 Fused to EB1

Protein crystallography data

The structure of The Neck-Linker + Dal and Alpha 7 Helix of Drosophila Melanogaster Kinesin-1 Fused to EB1, PDB code: 5jvs was solved by R.K.Phillips, I.Rayment, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.59 / 2.25
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 40.016, 40.016, 185.369, 90.00, 90.00, 90.00
R / Rfree (%) 20 / 23.6

Zinc Binding Sites:

The binding sites of Zinc atom in the The Neck-Linker + Dal and Alpha 7 Helix of Drosophila Melanogaster Kinesin-1 Fused to EB1 (pdb code 5jvs). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Neck-Linker + Dal and Alpha 7 Helix of Drosophila Melanogaster Kinesin-1 Fused to EB1, PDB code: 5jvs:

Zinc binding site 1 out of 1 in 5jvs

Go back to Zinc Binding Sites List in 5jvs
Zinc binding site 1 out of 1 in the The Neck-Linker + Dal and Alpha 7 Helix of Drosophila Melanogaster Kinesin-1 Fused to EB1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Neck-Linker + Dal and Alpha 7 Helix of Drosophila Melanogaster Kinesin-1 Fused to EB1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn101

b:0.2
occ:0.25
O A:HOH219 3.1 55.1 1.0
OD2 A:ASP68 4.7 70.9 1.0
OE2 A:GLU66 4.9 0.5 1.0
CD A:GLU66 4.9 99.9 1.0

Reference:

R.K.Phillips, L.G.Peter, S.P.Gilbert, I.Rayment. Family-Specific Kinesin Structures Reveal Neck-Linker Length Based on Initiation of the Coiled-Coil. J.Biol.Chem. V. 291 20372 2016.
ISSN: ESSN 1083-351X
PubMed: 27462072
DOI: 10.1074/JBC.M116.737577
Page generated: Sun Oct 27 19:14:30 2024

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