Zinc in PDB 5jbj: Crystal Structure of Chicken LGP2 with 5'P 12-Mer Dsrna at 3.6 A Resolution

The structure of Crystal Structure of Chicken LGP2 with 5'P 12-Mer Dsrna at 3.6 A Resolution, PDB code: 5jbj was solved by S.Cusack, E.Uchikawa, M.Lethier, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	78.02 / 3.58
Space group	P 64
Cell size a, b, c (Å), α, β, γ (°)	90.090, 90.090, 196.730, 90.00, 90.00, 120.00
R / Rfree (%)	25.3 / 31.9

The binding sites of Zinc atom in the Crystal Structure of Chicken LGP2 with 5'P 12-Mer Dsrna at 3.6 A Resolution (pdb code 5jbj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Chicken LGP2 with 5'P 12-Mer Dsrna at 3.6 A Resolution, PDB code: 5jbj:

Zinc binding site 1 out of 1 in the Crystal Structure of Chicken LGP2 with 5'P 12-Mer Dsrna at 3.6 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Chicken LGP2 with 5'P 12-Mer Dsrna at 3.6 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn701 b:0.5 occ:1.00 SG A:CYS613 2.3 0.5 1.0 SG A:CYS557 2.3 0.7 1.0 SG A:CYS610 2.3 0.7 1.0 SG A:CYS554 2.3 0.4 1.0 CB A:CYS610 3.3 0.9 1.0 CB A:CYS554 3.4 1.0 1.0 CB A:CYS557 3.4 0.7 1.0 CB A:CYS613 3.4 0.8 1.0 N A:CYS557 3.9 0.9 1.0 N A:CYS613 4.2 0.9 1.0 CA A:CYS557 4.2 0.1 1.0 CA A:CYS613 4.3 0.8 1.0 CG1 A:VAL559 4.4 0.3 1.0 CB A:ASN556 4.6 0.6 1.0 CB A:GLN615 4.7 0.7 1.0 CA A:CYS610 4.8 0.2 1.0 CA A:CYS554 4.8 0.8 1.0 NE1 A:TRP617 4.9 0.1 1.0 C A:CYS613 4.9 0.2 1.0 C A:CYS557 4.9 0.8 1.0 ND2 A:ASN556 4.9 0.6 1.0 C A:ASN556 5.0 0.7 1.0

E.Uchikawa, M.Lethier, H.Malet, J.Brunel, D.Gerlier, S.Cusack. Structural Analysis of Dsrna Binding to Anti-Viral Pattern Recognition Receptors LGP2 and MDA5. Mol.Cell V. 62 586 2016.
ISSN: ISSN 1097-2765
PubMed: 27203181
DOI: 10.1016/J.MOLCEL.2016.04.021