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Zinc in PDB 5j46: Crystal Structure of A Peptide Deformylase From Burkholderia Multivorans

Enzymatic activity of Crystal Structure of A Peptide Deformylase From Burkholderia Multivorans

All present enzymatic activity of Crystal Structure of A Peptide Deformylase From Burkholderia Multivorans:
3.5.1.88;

Protein crystallography data

The structure of Crystal Structure of A Peptide Deformylase From Burkholderia Multivorans, PDB code: 5j46 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.92 / 1.95
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 41.720, 69.070, 119.870, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 20.7

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Peptide Deformylase From Burkholderia Multivorans (pdb code 5j46). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of A Peptide Deformylase From Burkholderia Multivorans, PDB code: 5j46:

Zinc binding site 1 out of 1 in 5j46

Go back to Zinc Binding Sites List in 5j46
Zinc binding site 1 out of 1 in the Crystal Structure of A Peptide Deformylase From Burkholderia Multivorans


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Peptide Deformylase From Burkholderia Multivorans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn200

b:24.8
occ:1.00
NE2 A:HIS152 2.1 30.5 1.0
NE2 A:HIS148 2.1 29.2 1.0
O A:HOH302 2.1 24.9 1.0
SG A:CYS106 2.3 22.6 1.0
CD2 A:HIS152 3.0 29.4 1.0
CD2 A:HIS148 3.0 26.8 1.0
CE1 A:HIS152 3.1 29.6 1.0
CE1 A:HIS148 3.2 27.2 1.0
CB A:CYS106 3.4 22.9 1.0
O A:HOH340 3.5 23.2 1.0
NE2 A:GLN65 3.6 20.3 1.0
CA A:CYS106 3.8 23.0 1.0
OE1 A:GLN65 3.9 22.7 1.0
CD A:GLN65 4.0 22.0 1.0
N A:LEU107 4.2 20.9 1.0
ND1 A:HIS152 4.2 30.4 1.0
CG A:HIS152 4.2 29.1 1.0
CG A:HIS148 4.2 25.5 1.0
ND1 A:HIS148 4.2 26.5 1.0
OE2 A:GLU149 4.3 24.0 1.0
C A:CYS106 4.4 22.8 1.0
O A:HOH341 4.5 23.5 1.0
O A:GLY105 4.8 25.7 1.0
N A:SER108 4.8 20.4 1.0

Reference:

K.T.Potts, J.Abendroth, D.D.Lorimer, T.E.Edwards. Crystal Structure of A Peptide Deformylase From Burkholderia Multivorans To Be Published.
Page generated: Wed Dec 16 06:24:26 2020

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