Zinc in PDB 5j40: The X-Ray Structure of Jcv Helicase

The structure of The X-Ray Structure of Jcv Helicase, PDB code: 5j40 was solved by E.Ter Haar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.97 / 2.17
Space group	P 6
Cell size a, b, c (Å), α, β, γ (°)	109.910, 109.910, 67.890, 90.00, 90.00, 120.00
R / Rfree (%)	16.9 / 22.8

The binding sites of Zinc atom in the The X-Ray Structure of Jcv Helicase (pdb code 5j40). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The X-Ray Structure of Jcv Helicase, PDB code: 5j40:

Zinc binding site 1 out of 1 in the The X-Ray Structure of Jcv Helicase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The X-Ray Structure of Jcv Helicase within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn701 b:44.8 occ:1.00 ND1 A:HIS318 1.9 41.6 1.0 NE2 A:HIS314 2.0 41.5 1.0 SG A:CYS306 2.2 50.2 1.0 SG A:CYS303 2.3 49.9 1.0 CE1 A:HIS318 2.8 40.6 1.0 CD2 A:HIS314 2.9 41.8 1.0 CG A:HIS318 3.0 39.5 1.0 CE1 A:HIS314 3.1 39.9 1.0 CB A:CYS303 3.2 48.8 1.0 CB A:CYS306 3.3 49.5 1.0 CB A:HIS318 3.5 36.8 1.0 N A:CYS306 3.5 48.3 1.0 CA A:CYS306 3.9 49.5 1.0 NE2 A:HIS318 4.0 40.7 1.0 CG A:HIS314 4.1 39.9 1.0 CD2 A:HIS318 4.1 40.9 1.0 ND1 A:HIS314 4.2 40.2 1.0 CB A:ALA305 4.4 45.7 1.0 C A:ALA305 4.4 51.9 1.0 CA A:CYS303 4.6 51.4 1.0 O A:HOH1047 4.7 45.0 1.0 O A:HOH962 4.8 64.7 1.0 CA A:ALA305 4.8 47.3 1.0 CA A:PRO300 5.0 50.6 1.0 C A:CYS303 5.0 56.1 1.0

D.Bonafoux, S.Nanthakumar, U.K.Bandarage, C.Memmott, D.Lowe, A.M.Aronov, G.R.Bhisetti, K.C.Bonanno, J.Coll, J.Leeman, C.A.Lepre, F.Lu, E.Perola, R.Rijnbrand, W.P.Taylor, D.Wilson, Y.Zhou, J.Zwahlen, E.Ter Haar. Fragment-Based Discovery of Dual Jc Virus and Bk Virus Helicase Inhibitors. J.Med.Chem. V. 59 7138 2016.
ISSN: ISSN 0022-2623
PubMed: 27385654
DOI: 10.1021/ACS.JMEDCHEM.6B00486