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Zinc in PDB 5g34: Structure of RAD14 in Complex with Acetylaminoanthracene-C8- Guanine Containing Dna

Protein crystallography data

The structure of Structure of RAD14 in Complex with Acetylaminoanthracene-C8- Guanine Containing Dna, PDB code: 5g34 was solved by N.Simon, C.Ebert, S.Schneider, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.12 / 1.90
Space group P 41
Cell size a, b, c (Å), α, β, γ (°) 53.065, 53.065, 130.323, 90.00, 90.00, 90.00
R / Rfree (%) 21.721 / 24.392

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of RAD14 in Complex with Acetylaminoanthracene-C8- Guanine Containing Dna (pdb code 5g34). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of RAD14 in Complex with Acetylaminoanthracene-C8- Guanine Containing Dna, PDB code: 5g34:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 5g34

Go back to Zinc Binding Sites List in 5g34
Zinc binding site 1 out of 2 in the Structure of RAD14 in Complex with Acetylaminoanthracene-C8- Guanine Containing Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of RAD14 in Complex with Acetylaminoanthracene-C8- Guanine Containing Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1302

b:29.1
occ:1.00
SG A:CYS216 2.2 33.5 1.0
SG A:CYS213 2.3 33.4 1.0
SG A:CYS194 2.3 33.6 1.0
SG A:CYS191 2.3 32.5 1.0
CB A:CYS191 3.1 33.2 1.0
CB A:CYS216 3.2 32.6 1.0
CB A:CYS194 3.3 35.3 1.0
CB A:CYS213 3.5 34.5 1.0
N A:CYS194 3.6 36.5 1.0
N A:CYS213 4.0 33.1 1.0
CA A:CYS194 4.0 36.6 1.0
CA A:CYS213 4.2 33.5 1.0
N A:CYS216 4.3 32.0 1.0
CA A:CYS216 4.3 32.2 1.0
CB A:GLU193 4.5 37.5 1.0
ND2 A:ASN197 4.5 33.2 1.0
CA A:CYS191 4.5 34.2 1.0
CB A:ASN197 4.5 33.2 1.0
C A:GLU193 4.6 37.9 1.0
O A:CYS213 4.8 31.9 1.0
N A:GLU193 4.8 36.9 1.0
C A:CYS213 4.9 32.8 1.0
CA A:GLU193 4.9 37.8 1.0
C A:CYS191 5.0 35.3 1.0
C A:CYS194 5.0 37.4 1.0

Zinc binding site 2 out of 2 in 5g34

Go back to Zinc Binding Sites List in 5g34
Zinc binding site 2 out of 2 in the Structure of RAD14 in Complex with Acetylaminoanthracene-C8- Guanine Containing Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of RAD14 in Complex with Acetylaminoanthracene-C8- Guanine Containing Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1302

b:29.1
occ:1.00
SG B:CYS216 2.2 31.1 1.0
SG B:CYS194 2.3 32.9 1.0
SG B:CYS213 2.4 30.9 1.0
SG B:CYS191 2.4 32.1 1.0
CB B:CYS191 3.1 33.3 1.0
CB B:CYS216 3.2 30.5 1.0
CB B:CYS194 3.3 34.2 1.0
CB B:CYS213 3.5 32.0 1.0
N B:CYS194 3.6 35.5 1.0
N B:CYS213 4.0 30.8 1.0
CA B:CYS194 4.1 35.6 1.0
N B:CYS216 4.3 30.3 1.0
CA B:CYS213 4.3 31.2 1.0
CA B:CYS216 4.3 30.5 1.0
ND2 B:ASN197 4.4 32.5 1.0
CB B:GLU193 4.5 36.0 1.0
CB B:ASN197 4.5 33.0 1.0
CA B:CYS191 4.5 34.6 1.0
C B:GLU193 4.7 36.9 1.0
O B:CYS213 4.8 29.9 1.0
N B:GLU193 4.8 36.2 1.0
C B:CYS213 4.9 30.7 1.0
CA B:GLU193 4.9 36.7 1.0
C B:CYS194 5.0 36.9 1.0
C B:CYS191 5.0 35.6 1.0

Reference:

S.Schneider, N.Simon, C.Ebert. Structural Basis For Bulky Adduct Dna Lesion Recognition By the Nucleotide Excision Repair Protein RAD14. Chemistry V. 22 10782 2016.
ISSN: ISSN 0947-6539
PubMed: 27223336
DOI: 10.1002/CHEM.201602438
Page generated: Wed Dec 16 06:18:29 2020

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