Zinc in PDB 5frz: Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr with 3,4-Dimethylphenol

The structure of Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr with 3,4-Dimethylphenol, PDB code: 5frz was solved by V.V.Patil, E.J.Woo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	22.926 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	45.851, 70.583, 104.956, 90.00, 90.00, 90.00
R / Rfree (%)	21.81 / 29.44

The binding sites of Zinc atom in the Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr with 3,4-Dimethylphenol (pdb code 5frz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr with 3,4-Dimethylphenol, PDB code: 5frz:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr with 3,4-Dimethylphenol


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr with 3,4-Dimethylphenol within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1208 b:30.9 occ:1.00 OE2 A:GLU174 2.1 26.5 1.0 SG A:CYS185 2.2 34.5 1.0 SG A:CYS151 2.3 27.1 1.0 SG A:CYS177 2.3 37.5 1.0 CD A:GLU174 3.1 27.5 1.0 CB A:CYS177 3.2 37.3 1.0 CB A:CYS151 3.2 21.8 1.0 OE1 A:GLU174 3.4 28.7 1.0 CB A:CYS185 3.4 35.6 1.0 CA A:CYS177 3.6 42.9 1.0 N A:CYS151 4.0 27.1 1.0 N A:VAL178 4.1 42.6 1.0 CA A:CYS151 4.2 24.5 1.0 C A:CYS177 4.3 43.9 1.0 O A:GLU176 4.4 36.3 1.0 OG A:SER133 4.4 28.8 1.0 CG A:GLU174 4.4 30.4 1.0 CG2 A:VAL178 4.5 39.7 1.0 CE3 A:TRP130 4.5 24.7 1.0 CA A:CYS185 4.6 35.1 1.0 N A:VAL150 4.7 32.2 1.0 CB A:SER133 4.7 25.6 1.0 N A:CYS177 4.8 40.6 1.0 CZ3 A:TRP130 4.8 27.7 1.0 N A:GLY179 4.9 41.3 1.0 CA A:GLY136 4.9 36.9 1.0 C A:VAL150 5.0 30.6 1.0 CG2 A:VAL150 5.0 34.3 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr with 3,4-Dimethylphenol


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr with 3,4-Dimethylphenol within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1208 b:39.3 occ:1.00 OE1 B:GLU174 2.1 34.3 1.0 SG B:CYS185 2.2 35.4 1.0 SG B:CYS151 2.3 36.9 1.0 SG B:CYS177 2.5 48.1 1.0 CB B:CYS177 3.1 44.5 1.0 CD B:GLU174 3.1 36.1 1.0 CB B:CYS151 3.1 29.8 1.0 CB B:CYS185 3.4 37.8 1.0 OE2 B:GLU174 3.5 37.2 1.0 CA B:CYS177 3.7 46.1 1.0 N B:CYS151 3.9 38.5 1.0 CA B:CYS151 4.2 35.2 1.0 N B:VAL178 4.2 43.7 1.0 C B:CYS177 4.4 49.6 1.0 CG B:GLU174 4.4 34.6 1.0 CG2 B:VAL178 4.4 47.7 1.0 OG B:SER133 4.4 32.6 1.0 CA B:CYS185 4.5 35.9 1.0 CE3 B:TRP130 4.6 27.5 1.0 O B:GLU176 4.6 41.3 1.0 N B:VAL150 4.7 41.3 1.0 CB B:SER133 4.7 29.2 1.0 CG2 B:VAL150 4.9 43.9 1.0 C B:VAL150 4.9 42.0 1.0 N B:CYS177 4.9 44.4 1.0 CZ3 B:TRP130 4.9 26.0 1.0 CA B:GLY136 5.0 43.3 1.0

V.V.Patil, K.-H.Park, S.-G.Lee, E.J.Woo. Structural Analysis of the Phenol-Responsive Sensory Domain of the Transcription Activator Poxr Structure V. 624 24 2016.
ISSN: ISSN 0969-2126
PubMed: 27050690
DOI: 10.1016/J.STR.2016.03.006