Zinc in PDB 5euf: The Crystal Structure of A Protease From Helicobacter Pylori

The structure of The Crystal Structure of A Protease From Helicobacter Pylori, PDB code: 5euf was solved by K.Tan, M.Zhou, K.Kwon, W.F.Anderson, A.Joachimiak, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.80 / 2.80
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	155.159, 50.266, 147.889, 90.00, 94.86, 90.00
R / Rfree (%)	18.6 / 24.5

The binding sites of Zinc atom in the The Crystal Structure of A Protease From Helicobacter Pylori (pdb code 5euf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the The Crystal Structure of A Protease From Helicobacter Pylori, PDB code: 5euf:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the The Crystal Structure of A Protease From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of A Protease From Helicobacter Pylori within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn502 b:85.5 occ:0.69 NE2 A:HIS78 2.2 62.2 1.0 OE2 A:GLU158 2.4 66.1 1.0 CE1 A:HIS78 2.9 51.4 1.0 CD A:GLU158 3.2 74.8 1.0 NE2 A:HIS82 3.3 50.4 1.0 OE1 A:GLU158 3.3 70.0 1.0 CD2 A:HIS78 3.3 53.3 1.0 CE1 A:HIS82 4.0 62.4 1.0 ND1 A:HIS78 4.1 34.4 1.0 OE2 A:GLU81 4.2 67.6 1.0 CD2 A:HIS82 4.3 55.8 1.0 CG A:HIS78 4.3 32.5 1.0 CD A:GLU81 4.6 62.4 1.0 OE1 A:GLU81 4.7 64.6 1.0 CG A:GLU158 4.7 71.2 1.0

Zinc binding site 2 out of 4 in the The Crystal Structure of A Protease From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Crystal Structure of A Protease From Helicobacter Pylori within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn503 b:0.7 occ:1.00 OE1 A:GLN329 2.9 62.2 1.0 CB A:GLN329 3.8 60.4 1.0 CD A:GLN329 4.0 56.4 1.0 OD2 A:ASP295 4.2 52.4 1.0 O A:HOH611 4.4 31.3 1.0 CG A:GLN329 4.5 55.3 1.0 O A:ASN327 4.8 45.1 1.0 N A:GLN329 4.9 28.1 1.0 CG A:ASP295 4.9 56.0 1.0

Zinc binding site 3 out of 4 in the The Crystal Structure of A Protease From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Crystal Structure of A Protease From Helicobacter Pylori within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn502 b:92.0 occ:0.87 OE2 B:GLU158 2.1 58.5 1.0 NE2 B:HIS78 2.4 55.5 1.0 CD B:GLU158 2.9 73.3 1.0 CE1 B:HIS78 2.9 36.8 1.0 OE1 B:GLU158 3.0 71.0 1.0 CE1 B:HIS82 3.2 45.1 1.0 CD2 B:HIS78 3.6 35.9 1.0 NE2 B:HIS82 3.9 47.7 1.0 ND1 B:HIS78 4.2 28.7 1.0 ND1 B:HIS82 4.3 42.6 1.0 CG B:GLU158 4.4 72.3 1.0 OE2 B:GLU81 4.5 51.0 1.0 CG B:HIS78 4.5 26.0 1.0 OE1 B:GLU81 4.7 58.4 1.0 CD B:GLU81 4.8 51.2 1.0

Zinc binding site 4 out of 4 in the The Crystal Structure of A Protease From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of The Crystal Structure of A Protease From Helicobacter Pylori within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn503 b:0.7 occ:1.00 OE1 B:GLN329 2.9 51.5 1.0 CB B:GLN329 3.6 42.7 1.0 CD B:GLN329 4.0 42.0 1.0 OD2 B:ASP295 4.4 37.3 1.0 CG B:GLN329 4.4 34.5 1.0 O B:ASN327 4.5 32.9 1.0 O B:HOH602 4.5 38.9 1.0 N B:GLN329 4.6 16.0 1.0 CA B:GLN329 4.8 37.6 1.0 OD1 B:ASP295 4.8 42.7 1.0 CG B:ASP295 4.9 27.8 1.0

K.Tan, M.Zhou, K.Kwon, W.F.Anderson, A.Joachimiak. The Crystal Structure of A Protease From Helicobacter Pylori To Be Published.