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Zinc in PDB 5ein: Crystal Structure of C148A Mutant of Lysy From Thermus Thermophilus in Complex with Nadp+ and Lysw-Gamma-Aminoadipic Acid

Enzymatic activity of Crystal Structure of C148A Mutant of Lysy From Thermus Thermophilus in Complex with Nadp+ and Lysw-Gamma-Aminoadipic Acid

All present enzymatic activity of Crystal Structure of C148A Mutant of Lysy From Thermus Thermophilus in Complex with Nadp+ and Lysw-Gamma-Aminoadipic Acid:
1.2.1.38;

Protein crystallography data

The structure of Crystal Structure of C148A Mutant of Lysy From Thermus Thermophilus in Complex with Nadp+ and Lysw-Gamma-Aminoadipic Acid, PDB code: 5ein was solved by T.Shimizu, T.Tomita, M.Nishiyama, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.25 / 1.70
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 83.540, 83.540, 167.781, 90.00, 90.00, 120.00
R / Rfree (%) 17.1 / 21

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of C148A Mutant of Lysy From Thermus Thermophilus in Complex with Nadp+ and Lysw-Gamma-Aminoadipic Acid (pdb code 5ein). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of C148A Mutant of Lysy From Thermus Thermophilus in Complex with Nadp+ and Lysw-Gamma-Aminoadipic Acid, PDB code: 5ein:

Zinc binding site 1 out of 1 in 5ein

Go back to Zinc Binding Sites List in 5ein
Zinc binding site 1 out of 1 in the Crystal Structure of C148A Mutant of Lysy From Thermus Thermophilus in Complex with Nadp+ and Lysw-Gamma-Aminoadipic Acid


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of C148A Mutant of Lysy From Thermus Thermophilus in Complex with Nadp+ and Lysw-Gamma-Aminoadipic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn101

b:44.0
occ:1.00
 SG C:CYS5 2.3 48.2 1.0
SG C:CYS28 2.4 52.3 1.0
SG C:CYS8 2.4 47.2 1.0
SG C:CYS25 2.4 46.1 1.0
CB C:CYS25 3.3 52.8 1.0
CB C:CYS8 3.3 47.3 1.0
CB C:CYS28 3.3 55.3 1.0
CB C:CYS5 3.3 47.4 1.0
N C:CYS8 3.8 47.2 1.0
N C:CYS28 3.8 57.9 1.0
CA C:CYS8 4.1 47.5 1.0
CA C:CYS28 4.1 55.3 1.0
CB C:ALA10 4.5 45.1 1.0
CB C:GLU7 4.7 53.3 1.0
C C:CYS8 4.7 45.6 1.0
CA C:CYS5 4.7 47.6 1.0
CA C:CYS25 4.7 56.4 1.0
C C:GLU7 4.8 51.3 1.0
C C:CYS28 4.8 54.2 1.0
CB C:ALA30 4.8 60.1 1.0
N C:GLY9 4.8 43.9 1.0
CB C:ASP27 4.8 68.1 1.0
N C:ALA10 4.8 43.4 1.0
N C:GLY29 4.9 54.0 1.0
C C:ASP27 5.0 61.3 1.0

Reference:

T.Shimizu, T.Tomita, T.Kuzuyama, M.Nishiyama. Crystal Structure of the Lysylysw Complex From Thermus Thermophilus. J.Biol.Chem. 2016.
ISSN: ESSN 1083-351X
PubMed: 26966182
DOI: 10.1074/JBC.M115.707034
Page generated: Wed Dec 16 06:10:02 2020

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