Zinc in PDB 5drr: Crystal Structure of the Pseudomonas Aeruginosa Lpxc/Lpc-058 Complex

The structure of Crystal Structure of the Pseudomonas Aeruginosa Lpxc/Lpc-058 Complex, PDB code: 5drr was solved by C.-J.Lee, J.Najeeb, P.Zhou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.32 / 1.59
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	52.830, 73.900, 88.170, 90.00, 90.00, 90.00
R / Rfree (%)	17.9 / 21

The structure of Crystal Structure of the Pseudomonas Aeruginosa Lpxc/Lpc-058 Complex also contains other interesting chemical elements:

Fluorine

(F)

2 atoms

The binding sites of Zinc atom in the Crystal Structure of the Pseudomonas Aeruginosa Lpxc/Lpc-058 Complex (pdb code 5drr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Pseudomonas Aeruginosa Lpxc/Lpc-058 Complex, PDB code: 5drr:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the Pseudomonas Aeruginosa Lpxc/Lpc-058 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Pseudomonas Aeruginosa Lpxc/Lpc-058 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:17.0 occ:1.00 NE2 A:HIS237 2.1 14.5 1.0 OD1 A:ASP241 2.1 15.3 1.0 NE2 A:HIS78 2.1 14.8 1.0 O01 A:5EN303 2.1 16.9 1.0 O04 A:5EN303 2.2 16.2 1.0 OD2 A:ASP241 2.7 17.0 1.0 CG A:ASP241 2.7 17.1 1.0 C02 A:5EN303 2.9 16.1 1.0 N03 A:5EN303 2.9 16.4 1.0 CE1 A:HIS237 3.0 14.7 1.0 CD2 A:HIS78 3.1 15.7 1.0 CD2 A:HIS237 3.1 16.1 1.0 CE1 A:HIS78 3.1 16.1 1.0 OG1 A:THR190 4.0 16.0 1.0 ND1 A:HIS237 4.1 14.5 1.0 CG A:HIS237 4.2 15.5 1.0 CB A:ASP241 4.2 15.6 1.0 ND1 A:HIS78 4.2 15.8 1.0 CG A:HIS78 4.2 16.7 1.0 CG A:GLU77 4.3 15.8 1.0 C05 A:5EN303 4.3 16.1 1.0 CB A:THR190 4.3 16.6 1.0 OE2 A:GLU77 4.3 19.0 1.0 C28 A:5EN303 4.7 22.6 1.0 CE1 A:HIS264 4.7 17.7 1.0 NE2 A:HIS264 4.8 17.9 1.0 CA A:ASP241 4.8 13.5 1.0 C31 A:5EN303 4.8 19.7 1.0 CD A:GLU77 4.8 18.8 1.0 C26 A:5EN303 4.9 17.3 1.0 N06 A:5EN303 4.9 17.2 1.0 O A:HIS237 4.9 16.0 1.0 CA A:THR190 4.9 15.4 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the Pseudomonas Aeruginosa Lpxc/Lpc-058 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Pseudomonas Aeruginosa Lpxc/Lpc-058 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:26.3 occ:0.92 ND1 A:HIS162 2.1 30.0 1.0 OE1 A:GLU219 2.1 36.3 1.0 OE2 A:GLU219 2.6 34.3 1.0 CD A:GLU219 2.7 33.6 1.0 CE1 A:HIS162 3.0 30.6 1.0 CG A:HIS162 3.2 26.6 1.0 CB A:HIS162 3.6 21.9 1.0 CA A:HIS162 3.7 20.6 1.0 NE2 A:HIS162 4.1 32.2 1.0 CG A:GLU219 4.2 30.5 1.0 CD2 A:HIS162 4.3 29.3 1.0 CD A:PRO163 4.3 21.2 1.0 N A:HIS162 4.3 19.9 1.0 O A:HOH577 4.9 34.5 1.0 CB A:GLU219 4.9 25.8 1.0

C.J.Lee, X.Liang, Q.Wu, J.Najeeb, J.Zhao, R.Gopalaswamy, M.Titecat, F.Sebbane, N.Lemaitre, E.J.Toone, P.Zhou. Drug Design From the Cryptic Inhibitor Envelope. Nat Commun V. 7 10638 2016.
ISSN: ESSN 2041-1723
PubMed: 26912110
DOI: 10.1038/NCOMMS10638