Zinc in PDB 5d56: In Meso in Situ Serial X-Ray Crystallography Structure of Diacylglycerol Kinase, Dgka, at 100 K

Enzymatic activity of In Meso in Situ Serial X-Ray Crystallography Structure of Diacylglycerol Kinase, Dgka, at 100 K

All present enzymatic activity of In Meso in Situ Serial X-Ray Crystallography Structure of Diacylglycerol Kinase, Dgka, at 100 K:
2.7.1.107;

Protein crystallography data

The structure of In Meso in Situ Serial X-Ray Crystallography Structure of Diacylglycerol Kinase, Dgka, at 100 K, PDB code: 5d56 was solved by C.-Y.Huang, N.Howe, V.Olieric, R.Warshamanage, K.Diederichs, M.Wang, M.Caffrey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.52 / 2.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 74.800, 93.040, 143.050, 90.00, 90.00, 90.00
R / Rfree (%) 24.3 / 28.3

Zinc Binding Sites:

The binding sites of Zinc atom in the In Meso in Situ Serial X-Ray Crystallography Structure of Diacylglycerol Kinase, Dgka, at 100 K (pdb code 5d56). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the In Meso in Situ Serial X-Ray Crystallography Structure of Diacylglycerol Kinase, Dgka, at 100 K, PDB code: 5d56:

Zinc binding site 1 out of 1 in 5d56

Go back to Zinc Binding Sites List in 5d56
Zinc binding site 1 out of 1 in the In Meso in Situ Serial X-Ray Crystallography Structure of Diacylglycerol Kinase, Dgka, at 100 K


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of In Meso in Situ Serial X-Ray Crystallography Structure of Diacylglycerol Kinase, Dgka, at 100 K within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn201

b:0.9
occ:0.64
OE2 D:GLU28 2.1 0.9 1.0
OE1 D:GLU76 2.2 0.8 1.0
OE1 D:GLU28 2.5 0.8 1.0
CD D:GLU28 2.6 0.1 1.0
OE2 D:GLU76 2.6 0.2 1.0
O D:ACT203 2.7 0.3 1.0
CD D:GLU76 2.7 0.7 1.0
OA2 D:FLC202 3.6 0.3 1.0
C D:ACT203 3.6 0.9 1.0
OXT D:ACT203 3.7 0.3 1.0
OA1 D:FLC202 3.8 0.2 1.0
CG D:GLU28 4.0 82.3 1.0
CAC D:FLC202 4.2 0.4 1.0
CG D:GLU76 4.2 0.7 1.0
CB D:GLU76 4.9 93.3 1.0

Reference:

C.Y.Huang, V.Olieric, P.Ma, N.Howe, L.Vogeley, X.Liu, R.Warshamanage, T.Weinert, E.Panepucci, B.Kobilka, K.Diederichs, M.Wang, M.Caffrey. In Meso in Situ Serial X-Ray Crystallography of Soluble and Membrane Proteins at Cryogenic Temperatures. Acta Crystallogr D Struct V. 72 93 2016BIOL.
ISSN: ISSN 2059-7983
PubMed: 26894538
DOI: 10.1107/S2059798315021683
Page generated: Wed Dec 16 06:08:06 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy