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Zinc in PDB 5czo: Structure of S. Cerevisiae HRR25:MAM1 Complex, Form 2

Enzymatic activity of Structure of S. Cerevisiae HRR25:MAM1 Complex, Form 2

All present enzymatic activity of Structure of S. Cerevisiae HRR25:MAM1 Complex, Form 2:
2.7.11.1;

Protein crystallography data

The structure of Structure of S. Cerevisiae HRR25:MAM1 Complex, Form 2, PDB code: 5czo was solved by Q.Ye, K.D.Corbett, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.69 / 2.89
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 52.701, 83.841, 132.508, 90.00, 92.57, 90.00
R / Rfree (%) 21.8 / 25.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of S. Cerevisiae HRR25:MAM1 Complex, Form 2 (pdb code 5czo). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of S. Cerevisiae HRR25:MAM1 Complex, Form 2, PDB code: 5czo:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 5czo

Go back to Zinc Binding Sites List in 5czo
Zinc binding site 1 out of 2 in the Structure of S. Cerevisiae HRR25:MAM1 Complex, Form 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of S. Cerevisiae HRR25:MAM1 Complex, Form 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn201

b:83.3
occ:1.00
ND1 C:HIS116 2.1 75.7 1.0
SG C:CYS114 2.3 82.7 1.0
SG C:CYS119 2.3 68.4 1.0
SG C:CYS152 2.3 80.2 1.0
CG C:HIS116 2.7 79.8 1.0
CB C:HIS116 2.7 84.8 1.0
CB C:CYS119 3.0 82.4 1.0
CE1 C:HIS116 3.2 73.3 1.0
CB C:CYS152 3.3 63.9 1.0
CB C:CYS114 3.5 0.9 1.0
CD2 C:HIS116 3.9 76.4 1.0
CA C:HIS116 4.0 92.2 1.0
NE2 C:HIS116 4.1 75.6 1.0
N C:HIS116 4.3 0.3 1.0
CD2 C:LEU148 4.4 57.4 1.0
CA C:CYS119 4.4 82.8 1.0
CA C:CYS152 4.7 66.4 1.0
N C:CYS119 4.7 80.2 1.0
C C:HIS116 4.8 86.1 1.0
O C:HIS116 4.8 89.9 1.0
CA C:CYS114 4.9 0.9 1.0

Zinc binding site 2 out of 2 in 5czo

Go back to Zinc Binding Sites List in 5czo
Zinc binding site 2 out of 2 in the Structure of S. Cerevisiae HRR25:MAM1 Complex, Form 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of S. Cerevisiae HRR25:MAM1 Complex, Form 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn201

b:88.2
occ:1.00
ND1 D:HIS116 2.0 0.9 1.0
SG D:CYS152 2.3 95.3 1.0
SG D:CYS114 2.3 90.9 1.0
SG D:CYS119 2.3 0.5 1.0
CB D:CYS119 2.9 96.1 1.0
CG D:HIS116 2.9 0.3 1.0
CE1 D:HIS116 2.9 0.8 1.0
CB D:CYS152 3.3 99.3 1.0
CB D:HIS116 3.3 0.7 1.0
CB D:CYS114 3.3 0.0 1.0
NE2 D:HIS116 3.9 0.5 1.0
CD2 D:HIS116 4.0 0.0 1.0
CD2 D:LEU148 4.2 71.4 1.0
CA D:CYS119 4.3 97.5 1.0
CA D:HIS116 4.5 0.6 1.0
N D:HIS116 4.6 0.2 1.0
CA D:CYS152 4.7 99.1 1.0
CA D:CYS114 4.7 0.2 1.0
N D:CYS119 4.7 94.8 1.0
C D:CYS114 5.0 0.6 1.0

Reference:

Q.Ye, S.N.Ur, T.Y.Su, K.D.Corbett. Structure of the Saccharomyces Cerevisiae HRR25:MAM1 Monopolin Subcomplex Reveals A Novel Kinase Regulator. Embo J. V. 35 2139 2016.
ISSN: ISSN 0261-4189
PubMed: 27491543
DOI: 10.15252/EMBJ.201694082
Page generated: Wed Dec 16 06:07:39 2020

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