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Zinc in PDB 5cw3: Structure of CFBRCC36-CFKIAA0157 Complex (Zn Edge)

Protein crystallography data

The structure of Structure of CFBRCC36-CFKIAA0157 Complex (Zn Edge), PDB code: 5cw3 was solved by E.Zeqiraj, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.76 / 2.55
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.930, 116.580, 226.080, 90.00, 90.00, 90.00
R / Rfree (%) 21.1 / 25.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of CFBRCC36-CFKIAA0157 Complex (Zn Edge) (pdb code 5cw3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of CFBRCC36-CFKIAA0157 Complex (Zn Edge), PDB code: 5cw3:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 5cw3

Go back to Zinc Binding Sites List in 5cw3
Zinc binding site 1 out of 2 in the Structure of CFBRCC36-CFKIAA0157 Complex (Zn Edge)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of CFBRCC36-CFKIAA0157 Complex (Zn Edge) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:77.9
occ:1.00
OD2 A:ASP107 2.0 66.5 1.0
NE2 A:HIS96 2.2 53.8 1.0
NE2 A:HIS94 2.4 47.4 1.0
CG A:ASP107 2.8 69.2 1.0
OD1 A:ASP107 3.0 80.9 1.0
CD2 A:HIS94 3.0 40.6 1.0
CD2 A:HIS96 3.1 52.8 1.0
CE1 A:HIS96 3.2 55.3 1.0
CE1 A:HIS94 3.6 53.6 1.0
OG A:SER104 4.1 50.3 1.0
CG A:HIS94 4.3 42.2 1.0
CG A:HIS96 4.3 54.4 1.0
CB A:ASP107 4.3 57.4 1.0
ND1 A:HIS96 4.3 63.7 1.0
OD1 A:ASP60 4.3 0.6 1.0
OE2 A:GLU30 4.3 69.6 1.0
ND1 A:HIS94 4.5 45.8 1.0
N A:SER104 4.9 47.4 1.0
CG2 A:VAL62 4.9 57.5 1.0
CD1 A:ILE125 4.9 49.1 1.0
CB A:SER104 4.9 61.2 1.0
O A:SER95 5.0 47.0 1.0

Zinc binding site 2 out of 2 in 5cw3

Go back to Zinc Binding Sites List in 5cw3
Zinc binding site 2 out of 2 in the Structure of CFBRCC36-CFKIAA0157 Complex (Zn Edge)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of CFBRCC36-CFKIAA0157 Complex (Zn Edge) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn301

b:0.1
occ:1.00
NE2 C:HIS96 2.2 90.1 1.0
NE2 C:HIS94 2.4 75.4 1.0
OD1 C:ASP107 2.5 0.2 1.0
OD2 C:ASP107 2.6 0.5 1.0
CG C:ASP107 2.9 0.6 1.0
CD2 C:HIS94 3.0 65.2 1.0
CD2 C:HIS96 3.2 83.4 1.0
CE1 C:HIS96 3.2 88.3 1.0
OE2 C:GLU30 3.2 0.3 1.0
CE1 C:HIS94 3.5 87.2 1.0
OG C:SER104 3.9 99.1 1.0
CG C:HIS94 4.3 70.1 1.0
ND1 C:HIS96 4.3 82.2 1.0
CG C:HIS96 4.3 80.0 1.0
CB C:ASP107 4.4 0.7 1.0
CD C:GLU30 4.4 0.7 1.0
ND1 C:HIS94 4.5 82.0 1.0
CB C:SER104 4.9 0.8 1.0
N C:SER104 4.9 0.3 1.0
OE1 C:GLU30 5.0 0.2 1.0

Reference:

E.Zeqiraj, L.Tian, C.A.Piggott, M.C.Pillon, N.M.Duffy, D.F.Ceccarelli, A.F.Keszei, K.Lorenzen, I.Kurinov, S.Orlicky, G.D.Gish, A.J.Heck, A.Guarne, R.A.Greenberg, F.Sicheri. Higher-Order Assembly of BRCC36-KIAA0157 Is Required For Dub Activity and Biological Function. Mol.Cell V. 59 970 2015.
ISSN: ISSN 1097-2765
PubMed: 26344097
DOI: 10.1016/J.MOLCEL.2015.07.028
Page generated: Sun Oct 27 14:29:41 2024

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