Atomistry » Zinc » PDB 5a1l-5ab0 » 5a31
Atomistry »
  Zinc »
    PDB 5a1l-5ab0 »
      5a31 »

Zinc in PDB 5a31: Structure of the Human Apc-CDH1-HSL1-UBCH10 Complex.

Enzymatic activity of Structure of the Human Apc-CDH1-HSL1-UBCH10 Complex.

All present enzymatic activity of Structure of the Human Apc-CDH1-HSL1-UBCH10 Complex.:
2.3.2.23; 2.3.2.24;

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the Human Apc-CDH1-HSL1-UBCH10 Complex. (pdb code 5a31). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Structure of the Human Apc-CDH1-HSL1-UBCH10 Complex., PDB code: 5a31:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 5a31

Go back to Zinc Binding Sites List in 5a31
Zinc binding site 1 out of 3 in the Structure of the Human Apc-CDH1-HSL1-UBCH10 Complex.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Human Apc-CDH1-HSL1-UBCH10 Complex. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn101

b:0.4
occ:1.00
SG B:CYS23 2.5 0.1 1.0
SG B:CYS26 2.6 0.2 1.0
SG B:CYS59 2.7 0.9 1.0
CB B:CYS59 2.8 0.1 1.0
ND1 B:HIS56 2.9 0.7 1.0
CB B:CYS23 3.2 0.6 1.0
CB B:CYS26 3.3 0.0 1.0
CB B:HIS56 3.4 0.1 1.0
CG B:HIS56 3.6 0.5 1.0
N B:CYS26 3.6 0.6 1.0
N B:HIS56 3.8 0.9 1.0
CE1 B:HIS56 4.0 0.5 1.0
CA B:CYS26 4.1 0.3 1.0
CB B:ILE25 4.1 0.9 1.0
CA B:HIS56 4.2 0.2 1.0
CA B:CYS59 4.3 0.9 1.0
CB B:CYS34 4.3 0.2 1.0
O B:HIS56 4.5 0.6 1.0
CG2 B:ILE25 4.5 0.5 1.0
CA B:CYS23 4.6 1.0 1.0
C B:ILE25 4.6 0.4 1.0
N B:ILE25 4.7 0.5 1.0
CA B:ILE25 4.7 0.7 1.0
N B:CYS59 4.8 0.4 1.0
C B:HIS56 4.8 0.8 1.0
CD2 B:HIS56 4.8 1.0 1.0
C B:CYS23 4.9 0.7 1.0
C B:PHE55 4.9 0.9 1.0
C B:CYS26 5.0 0.8 1.0

Zinc binding site 2 out of 3 in 5a31

Go back to Zinc Binding Sites List in 5a31
Zinc binding site 2 out of 3 in the Structure of the Human Apc-CDH1-HSL1-UBCH10 Complex.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Human Apc-CDH1-HSL1-UBCH10 Complex. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn102

b:0.0
occ:1.00
ND1 B:HIS53 2.5 0.3 1.0
SG B:CYS73 2.6 1.0 1.0
SG B:CYS76 2.8 0.3 1.0
CG B:HIS53 3.0 0.5 1.0
SG B:CYS51 3.1 0.9 1.0
CB B:CYS51 3.1 0.1 1.0
CB B:CYS73 3.2 0.5 1.0
CB B:HIS53 3.2 0.2 1.0
CB B:CYS76 3.4 0.7 1.0
CE1 B:HIS53 3.4 0.5 1.0
N B:CYS76 3.8 0.1 1.0
CD2 B:HIS53 4.0 0.7 1.0
O B:CYS51 4.0 0.4 1.0
NE2 B:HIS53 4.1 0.7 1.0
CA B:CYS76 4.2 0.6 1.0
C B:CYS51 4.3 0.9 1.0
N B:HIS53 4.3 0.8 1.0
CA B:CYS51 4.4 0.7 1.0
CB B:MET75 4.4 0.0 1.0
CA B:HIS53 4.4 0.8 1.0
CA B:CYS73 4.7 0.5 1.0
C B:MET75 4.8 0.4 1.0
N B:SER52 5.0 0.7 1.0
C B:CYS76 5.0 0.8 1.0
CA B:MET75 5.0 1.0 1.0

Zinc binding site 3 out of 3 in 5a31

Go back to Zinc Binding Sites List in 5a31
Zinc binding site 3 out of 3 in the Structure of the Human Apc-CDH1-HSL1-UBCH10 Complex.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of the Human Apc-CDH1-HSL1-UBCH10 Complex. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn103

b:0.1
occ:1.00
ND1 B:HIS58 3.0 0.3 1.0
SG B:CYS34 3.1 0.5 1.0
N B:CYS37 3.2 0.1 1.0
CB B:CYS44 3.3 1.0 1.0
SG B:CYS44 3.4 0.6 1.0
CB B:CYS37 3.4 0.5 1.0
CE1 B:HIS58 3.5 0.5 1.0
O B:CYS34 3.6 0.6 1.0
CA B:CYS37 3.8 0.5 1.0
CB B:ASP36 3.8 0.9 1.0
N B:CYS34 3.9 0.8 1.0
CB B:CYS34 4.0 0.2 1.0
CG B:HIS58 4.1 0.9 1.0
C B:CYS34 4.1 0.9 1.0
C B:ASP36 4.1 0.1 1.0
O B:CYS37 4.1 0.5 1.0
N B:ASP36 4.2 0.1 1.0
CA B:CYS34 4.2 0.7 1.0
SG B:CYS37 4.2 0.7 1.0
CA B:ASP36 4.2 0.9 1.0
CG B:ASP36 4.3 0.6 1.0
CA B:CYS44 4.4 0.1 1.0
C B:CYS37 4.4 0.4 1.0
CB B:HIS58 4.5 0.0 1.0
NE2 B:HIS58 4.6 0.8 1.0
O B:VAL39 4.7 0.1 1.0
CB B:CYS33 4.7 0.1 1.0
OD2 B:ASP36 4.8 0.7 1.0
OD1 B:ASP36 4.8 0.5 1.0
CD2 B:HIS58 4.9 0.3 1.0
C B:CYS33 5.0 0.8 1.0

Reference:

L.Chang, Z.Zhang, J.Yang, S.H.Mclaughlin, D.Barford. Atomic Structure of the Apc/C and Its Mechanism of Protein Ubiquitination. Nature V. 522 450 2015.
ISSN: ISSN 0028-0836
PubMed: 26083744
DOI: 10.1038/NATURE14471
Page generated: Wed Dec 16 06:01:30 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy