Zinc in PDB 5a22: Structure of the L Protein of Vesicular Stomatitis Virus From Electron Cryomicroscopy

All present enzymatic activity of Structure of the L Protein of Vesicular Stomatitis Virus From Electron Cryomicroscopy:
2.7.7.6;

The binding sites of Zinc atom in the Structure of the L Protein of Vesicular Stomatitis Virus From Electron Cryomicroscopy (pdb code 5a22). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of the L Protein of Vesicular Stomatitis Virus From Electron Cryomicroscopy, PDB code: 5a22:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of the L Protein of Vesicular Stomatitis Virus From Electron Cryomicroscopy


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the L Protein of Vesicular Stomatitis Virus From Electron Cryomicroscopy within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn3000 b:0.7 occ:1.00 OE1 A:GLU1108 2.0 0.1 1.0 SG A:CYS1302 2.2 0.4 1.0 SG A:CYS1299 2.3 0.8 1.0 SG A:CYS1081 2.4 0.8 1.0 HB3 A:CYS1299 2.6 0.7 1.0 CB A:CYS1299 2.8 0.0 1.0 HB2 A:CYS1299 2.8 0.7 1.0 HB3 A:CYS1081 2.8 0.6 1.0 CD A:GLU1108 2.9 87.9 1.0 CB A:CYS1081 3.1 94.7 1.0 HG3 A:GLU1108 3.2 97.0 1.0 HB3 A:CYS1302 3.2 0.9 1.0 CB A:CYS1302 3.4 0.5 1.0 HA A:CYS1081 3.5 0.9 1.0 HA A:MET1109 3.6 91.8 1.0 CG A:GLU1108 3.6 80.8 1.0 CA A:CYS1081 3.8 0.6 1.0 OE2 A:GLU1108 3.9 83.0 1.0 HB3 A:MET1109 3.9 92.4 1.0 HB2 A:CYS1081 3.9 0.6 1.0 HB2 A:GLU1108 4.0 92.6 1.0 H A:CYS1302 4.0 0.1 1.0 HB2 A:CYS1302 4.0 0.9 1.0 CA A:MET1109 4.2 76.5 1.0 C A:CYS1081 4.2 0.6 1.0 CA A:CYS1299 4.3 0.8 1.0 N A:MET1109 4.3 45.8 1.0 CA A:CYS1302 4.3 1.0 1.0 CB A:GLU1108 4.3 77.2 1.0 HB2 A:MET1109 4.4 92.4 1.0 H A:ALA1083 4.4 71.3 1.0 HG2 A:GLU1108 4.4 97.0 1.0 CB A:MET1109 4.4 77.0 1.0 C A:GLU1108 4.4 67.6 1.0 O A:GLU1108 4.4 0.8 1.0 O A:CYS1081 4.5 83.1 1.0 C A:CYS1302 4.5 0.0 1.0 O A:CYS1299 4.5 0.1 1.0 HB1 A:ALA1083 4.5 86.2 1.0 N A:CYS1302 4.5 84.2 1.0 HB2 A:PRO1104 4.6 78.5 1.0 HA A:CYS1299 4.6 0.6 1.0 H A:MET1109 4.7 55.0 1.0 HB3 A:PRO1104 4.7 78.5 1.0 HB3 A:ALA1083 4.8 86.2 1.0 H A:LEU1303 4.8 0.1 1.0 O A:CYS1302 4.8 0.9 1.0 C A:CYS1299 4.8 0.1 1.0 H A:SER1082 4.9 0.8 1.0 N A:SER1082 4.9 0.8 1.0 N A:LEU1303 4.9 0.9 1.0 H A:CYS1299 4.9 0.0 1.0

Zinc binding site 2 out of 2 in the Structure of the L Protein of Vesicular Stomatitis Virus From Electron Cryomicroscopy


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the L Protein of Vesicular Stomatitis Virus From Electron Cryomicroscopy within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn3001 b:0.7 occ:1.00 HE2 A:HIS1296 1.5 0.4 1.0 ND1 A:HIS1294 2.0 65.7 1.0 NE2 A:HIS1296 2.1 94.5 1.0 SG A:CYS1120 2.5 0.6 1.0 SG A:CYS1123 2.6 0.6 1.0 CE1 A:HIS1296 2.7 76.0 1.0 HE1 A:HIS1296 2.9 91.2 1.0 CE1 A:HIS1294 2.9 90.5 1.0 HE1 A:HIS1294 3.0 0.6 1.0 CD2 A:HIS1296 3.1 82.0 1.0 CG A:HIS1294 3.2 52.9 1.0 HB3 A:HIS1294 3.2 92.0 1.0 HD2 A:HIS1296 3.4 98.4 1.0 HD22 A:ASN1124 3.5 0.3 1.0 HD21 A:ASN1124 3.5 0.3 1.0 CB A:HIS1294 3.6 76.7 1.0 ND2 A:ASN1124 3.7 0.9 1.0 HB2 A:HIS1294 3.7 92.0 1.0 ND1 A:HIS1296 3.9 50.1 1.0 HD1 A:TYR1130 3.9 73.9 1.0 HB3 A:CYS1120 4.0 0.5 1.0 CB A:CYS1120 4.0 0.8 1.0 CG A:HIS1296 4.0 39.5 1.0 NE2 A:HIS1294 4.1 86.2 1.0 CD2 A:HIS1294 4.2 57.8 1.0 O A:CYS1120 4.2 0.1 1.0 HA A:ASN1124 4.2 0.6 1.0 CB A:CYS1123 4.3 0.1 1.0 HD3 A:LYS1116 4.4 0.9 1.0 HE1 A:TYR1130 4.5 85.1 1.0 CD1 A:TYR1130 4.5 61.5 1.0 HB2 A:HIS1114 4.5 85.0 1.0 HB3 A:CYS1123 4.6 0.3 1.0 HD1 A:HIS1296 4.6 60.1 1.0 N A:ASN1124 4.6 0.8 1.0 HB2 A:CYS1120 4.6 0.5 1.0 C A:CYS1123 4.7 0.8 1.0 H A:ASN1124 4.7 0.2 1.0 HB3 A:HIS1114 4.7 85.0 1.0 CG A:ASN1124 4.7 0.6 1.0 CE1 A:TYR1130 4.7 70.9 1.0 HE2 A:HIS1294 4.8 0.5 1.0 HB2 A:CYS1123 4.9 0.3 1.0 CA A:ASN1124 4.9 0.5 1.0 O A:CYS1123 4.9 0.7 1.0 C A:CYS1120 4.9 0.5 1.0 HB2 A:TYR1130 5.0 0.6 1.0 CA A:CYS1120 5.0 0.3 1.0

B.Liang, Z.Li, S.Jenni, A.A.Rahmeh, B.M.Morin, T.Grant, N.Grigorieff, S.C.Harrison, S.P.Whelan. Structure of the L Protein of Vesicular Stomatitis Virus From Electron Cryomicroscopy. Cell(Cambridge,Mass.) V. 162 314 2015.
ISSN: ISSN 0092-8674
PubMed: 26144317
DOI: 10.1016/J.CELL.2015.06.018