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Zinc in PDB 4zxn: Crystal Structure of Rat Coronavirus Strain New-Jersey Hemagglutinin- Esterase

Enzymatic activity of Crystal Structure of Rat Coronavirus Strain New-Jersey Hemagglutinin- Esterase

All present enzymatic activity of Crystal Structure of Rat Coronavirus Strain New-Jersey Hemagglutinin- Esterase:
3.1.1.53;

Protein crystallography data

The structure of Crystal Structure of Rat Coronavirus Strain New-Jersey Hemagglutinin- Esterase, PDB code: 4zxn was solved by M.J.G.Bakkers, L.J.Feitsma, E.G.Huizinga, R.J.De Groot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.49 / 2.20
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 60.710, 184.370, 76.900, 90.00, 90.00, 90.00
R / Rfree (%) 23.2 / 27.8

Other elements in 4zxn:

The structure of Crystal Structure of Rat Coronavirus Strain New-Jersey Hemagglutinin- Esterase also contains other interesting chemical elements:

Sodium (Na) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Rat Coronavirus Strain New-Jersey Hemagglutinin- Esterase (pdb code 4zxn). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Rat Coronavirus Strain New-Jersey Hemagglutinin- Esterase, PDB code: 4zxn:

Zinc binding site 1 out of 1 in 4zxn

Go back to Zinc Binding Sites List in 4zxn
Zinc binding site 1 out of 1 in the Crystal Structure of Rat Coronavirus Strain New-Jersey Hemagglutinin- Esterase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Rat Coronavirus Strain New-Jersey Hemagglutinin- Esterase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn508

b:50.5
occ:1.00
 ND1 A:HIS336 1.9 48.1 1.0
OD1 A:ASP56 2.1 48.8 1.0
ND1 A:HIS52 2.2 53.7 1.0
OE1 A:GLU48 2.4 53.3 1.0
OE2 A:GLU48 2.6 53.4 1.0
CE1 A:HIS336 2.8 48.3 1.0
CD A:GLU48 2.9 54.0 1.0
CG A:ASP56 2.9 48.8 1.0
OD2 A:ASP56 3.0 50.0 1.0
CG A:HIS336 3.0 46.3 1.0
CE1 A:HIS52 3.0 54.0 1.0
CG A:HIS52 3.2 56.2 1.0
CB A:HIS336 3.4 45.8 1.0
CA A:HIS336 3.7 47.7 1.0
CB A:HIS52 3.7 56.8 1.0
CE3 A:TRP57 3.9 47.4 1.0
NE2 A:HIS336 4.0 46.5 1.0
CD2 A:HIS336 4.1 45.3 1.0
NE2 A:HIS52 4.1 56.5 1.0
CD2 A:HIS52 4.3 58.0 1.0
CB A:ASP56 4.4 47.5 1.0
CG A:GLU48 4.4 55.9 1.0
N A:TRP57 4.5 43.4 1.0
N A:HIS336 4.6 47.4 1.0
CZ3 A:TRP57 4.6 49.5 1.0
C A:HIS336 4.7 47.8 1.0
C A:ASP56 4.8 43.7 1.0
CB A:TRP57 4.8 42.6 1.0
O A:HIS336 4.9 49.8 1.0
CA A:ASP56 4.9 45.6 1.0
N A:ASP56 4.9 46.6 1.0
CD2 A:TRP57 5.0 45.2 1.0

Reference:

M.J.G.Bakkers, L.J.Feitsma, E.G.Huizinga, R.J.De Groot. Crystal Structures of Murine Coronavirus Hemagglutinin-Esterases Reveal Structural Basis For Esterase Substrate Specificity To Be Published.
Page generated: Wed Dec 16 06:00:31 2020

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