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Zinc in PDB 4ydo: Crystal Structure of Candida Albicans Protein Farnesyltransferase in Apo Form

Enzymatic activity of Crystal Structure of Candida Albicans Protein Farnesyltransferase in Apo Form

All present enzymatic activity of Crystal Structure of Candida Albicans Protein Farnesyltransferase in Apo Form:
2.5.1.58; 2.5.1.59;

Protein crystallography data

The structure of Crystal Structure of Candida Albicans Protein Farnesyltransferase in Apo Form, PDB code: 4ydo was solved by S.Kumar, M.F.Mabanglo, M.A.Hast, Y.Shi, L.S.Beese, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.30 / 3.00
Space group P 43 2 2
Cell size a, b, c (Å), α, β, γ (°) 96.824, 96.824, 189.082, 90.00, 90.00, 90.00
R / Rfree (%) 22.6 / 24.9

Other elements in 4ydo:

The structure of Crystal Structure of Candida Albicans Protein Farnesyltransferase in Apo Form also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Candida Albicans Protein Farnesyltransferase in Apo Form (pdb code 4ydo). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Candida Albicans Protein Farnesyltransferase in Apo Form, PDB code: 4ydo:

Zinc binding site 1 out of 1 in 4ydo

Go back to Zinc Binding Sites List in 4ydo
Zinc binding site 1 out of 1 in the Crystal Structure of Candida Albicans Protein Farnesyltransferase in Apo Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Candida Albicans Protein Farnesyltransferase in Apo Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn601

b:58.4
occ:1.00
OD1 B:ASP430 2.0 63.0 1.0
OD2 B:ASP430 2.0 61.2 1.0
NE2 B:HIS496 2.0 64.7 1.0
CG B:ASP430 2.2 62.4 1.0
SG B:CYS432 2.3 60.5 1.0
O B:HOH718 2.5 46.9 1.0
CD2 B:HIS496 2.9 65.9 1.0
CE1 B:HIS496 3.0 64.4 1.0
CB B:CYS432 3.4 61.8 1.0
CB B:ASP430 3.6 63.1 1.0
ND1 B:HIS496 4.0 65.1 1.0
CG B:HIS496 4.1 66.0 1.0
OD1 B:ASP486 4.1 63.2 1.0
CE2 B:TYR495 4.2 63.6 1.0
CG B:ASP486 4.2 64.2 1.0
N B:CYS432 4.2 64.7 1.0
O B:HOH702 4.3 52.8 1.0
CA B:CYS432 4.4 64.0 1.0
OD2 B:ASP486 4.5 64.7 1.0
CD2 B:TYR495 4.6 64.0 1.0
CA B:ASP430 4.7 65.1 1.0
CB B:ASP486 4.7 65.1 1.0
C B:ASP430 4.9 66.8 1.0
N B:ALA431 4.9 65.0 1.0

Reference:

S.Kumar, M.F.Mabanglo, M.A.Hast, Y.Shi, L.S.Beese. Crystal Structure of Candida Albicans Protein Farnesyltransferase in Apo Form To Be Published.
Page generated: Wed Dec 16 05:56:34 2020

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